Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p033907 Quercus lobata HOM05D001993 ORTHO05D009037 8.2e-218 760.4 466 100.0
CiPaw.01G251700 Carya illinoinensis HOM05D001993 ORTHO05D009037 4.5e-192 674.9 467 84.8
Potri.017G053400 Populus trichocarpa HOM05D001993 ORTHO05D009037 8.6e-191 670.6 467 83.3
Thecc.01G153800 Theobroma cacao HOM05D001993 ORTHO05D009037 3.1e-188 662.1 467 78.4
Cpa.g.sc10.126 Carica papaya HOM05D001993 ORTHO05D009037 3.7e-186 655.2 466 77.7
COL.COLO4_33613 Corchorus olitorius HOM05D001993 ORTHO05D009037 6.4e-186 654.4 467 81.4
Haze_16628 Corylus avellana HOM05D001993 ORTHO05D009037 1.4e-185 653.3 467 83.1
Cfa001914 Carpinus fangiana HOM05D001993 ORTHO05D009037 6.0e-184 647.9 467 82.7
Haze_16631 Corylus avellana HOM05D001993 ORTHO05D009037 1.0e-183 647.1 467 82.7
MD17G1219000 Malus domestica HOM05D001993 ORTHO05D009037 6.6e-183 644.4 467 79.7
Prupe.3G094500 Prunus persica HOM05D001993 ORTHO05D009037 1.1e-182 643.7 467 80.9
Atru.chr13.159 Acer truncatum HOM05D001993 ORTHO05D009037 1.5e-182 643.3 467 79.7
Gorai.004G256300 Gossypium raimondii HOM05D001993 ORTHO05D009037 1.5e-182 643.3 467 76.2
Manes.11G063100 Manihot esculenta HOM05D001993 ORTHO05D009037 1.5e-182 643.3 467 80.9
Gohir.D08G240900 Gossypium hirsutum HOM05D001993 ORTHO05D009037 1.9e-182 642.9 467 78.8
CSS0028818 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D009037 3.6e-181 638.6 467 81.6
RcHm_v2.0_Chr2g0133701 Rosa chinensis HOM05D001993 ORTHO05D009037 2.3e-180 636.0 467 79.9
Ciclev10025548m.g Citrus clementina HOM05D001993 ORTHO05D009037 5.2e-180 634.8 467 80.1
Lj3g0005746 Lotus japonicus HOM05D001993 ORTHO05D009037 1.2e-179 633.6 467 80.1
Gohir.A08G221654 Gossypium hirsutum HOM05D001993 ORTHO05D009037 3.4e-179 632.1 466 76.2
Glyma.15G004900 Glycine max HOM05D001993 ORTHO05D009037 8.3e-178 627.5 467 79.9
Oeu010088.1 Olea europaea HOM05D001993 ORTHO05D009037 7.1e-177 624.4 467 77.7
TPR.G19157 Trifolium pratense HOM05D001993 ORTHO05D009037 7.1e-177 624.4 467 76.7
VMungo1080G1544 Vigna mungo HOM05D001993 ORTHO05D009037 1.2e-176 623.6 467 79.2
TPR.G8903 Trifolium pratense HOM05D001993 ORTHO05D009037 7.8e-176 620.9 467 78.2
Lalb_Chr14g0373981 Lupinus albus HOM05D001993 ORTHO05D009037 1.7e-175 619.8 467 77.9
Medtr2g104760 Medicago truncatula HOM05D001993 ORTHO05D009037 3.0e-175 619.0 467 77.5
FAN09G0213 Fragaria x ananassa HOM05D001993 ORTHO05D009037 8.6e-175 617.5 467 78.2
Duzib147G1049 Durio zibethinus HOM05D001993 ORTHO05D009037 1.1e-174 617.1 467 74.3
CsaV3_7G032050 Cucumis sativus L. HOM05D001993 ORTHO05D009037 1.9e-174 616.3 467 77.1
Phvul.005G181200 Phaseolus vulgaris HOM05D001993 ORTHO05D009037 1.9e-174 616.3 467 78.2
MSTRG.22779 Avicennia marina HOM05D001993 ORTHO05D009037 2.5e-174 615.9 467 77.1
Sabra17G0045400 Salix brachista HOM05D001993 ORTHO05D009037 2.5e-174 615.9 492 75.6
Sed0024162 Sechium edule HOM05D001993 ORTHO05D009037 3.3e-174 615.5 467 73.2
Nitab4.5_0000233g0190 Nicotiana tabacum HOM05D001993 ORTHO05D009037 4.3e-174 615.1 467 73.0
FvH4_6g29021 Fragaria vesca HOM05D001993 ORTHO05D009037 5.6e-174 614.8 467 77.5
Ca_01029_v3 Cicer arietinum L. HOM05D001993 ORTHO05D009037 7.3e-174 614.4 467 78.6
Sabra17G0040600 Salix brachista HOM05D001993 ORTHO05D009037 7.3e-174 614.4 492 75.2
TAR625G0584 Trochodendron aralioides HOM05D001993 ORTHO05D009037 9.5e-174 614.0 467 77.9
Peaxi162Scf00108g00131 Petunia axillaris HOM05D001993 ORTHO05D009037 1.6e-173 613.2 467 72.2
FAN05G0323 Fragaria x ananassa HOM05D001993 ORTHO05D009037 3.6e-173 612.1 467 77.5
vmacro16868 Vaccinium macrocarpon HOM05D001993 ORTHO05D009037 8.1e-173 610.9 467 76.9
Sopen09g006100 Solanum pennellii HOM05D001993 ORTHO05D009037 1.1e-172 610.5 467 72.2
PGSC0003DMG400024263 Solanum tuberosum HOM05D001993 ORTHO05D009037 1.1e-172 610.5 467 72.4
CANSAT56G0483 Cannabis sativa HOM05D001993 ORTHO05D009037 1.8e-172 609.8 467 74.7
MELO3C023452.2 Cucumis melo HOM05D001993 ORTHO05D009037 3.1e-172 609.0 467 76.2
CAN.G697.13 Capsicum annuum HOM05D001993 ORTHO05D009037 6.8e-172 607.8 467 71.9
ClCG09G003170 Citrullus lanatus HOM05D001993 ORTHO05D009037 8.9e-172 607.4 467 77.3
Glyma.13G368900 Glycine max HOM05D001993 ORTHO05D009037 2.6e-171 605.9 395 76.2
Psat5g303960 Pisum sativum HOM05D001993 ORTHO05D009037 2.6e-171 605.9 467 71.7
Nn8g39702 Nelumbo nucifera HOM05D001993 ORTHO05D009037 4.4e-171 605.1 467 77.5
Solyc09g011370.3 Solanum lycopersicum HOM05D001993 ORTHO05D009037 7.6e-171 604.4 467 70.9
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 3.7e-170 602.1 466 71.5
Cc04_g04800 Coffea canephora HOM05D001993 ORTHO05D009037 9.2e-169 597.4 467 78.8
Eucgr.J03091 Eucalyptus grandis HOM05D001993 ORTHO05D009037 2.1e-168 596.3 467 76.2
Migut.I00727 Erythranthe guttata HOM05D001993 ORTHO05D009037 1.0e-167 594.0 467 70.9
Hma1.2p1_0109F.1_g052250 Hydrangea macrophylla HOM05D001993 ORTHO05D009037 1.7e-167 593.2 467 76.0
ATR0767G064 Amborella trichopoda HOM05D001993 ORTHO05D009037 5.1e-167 591.7 467 73.2
TWI12G1056 Tripterygium wilfordii HOM05D001993 ORTHO05D009037 3.3e-166 589.0 467 75.6
Lj5C77T4 Lonicera japonica HOM05D001993 ORTHO05D009037 2.1e-165 586.3 467 74.9
SalBow7G0151 Salvia bowleyana HOM05D001993 ORTHO05D009037 2.8e-165 585.9 468 74.6
Aa31LG4G850 Aethionema arabicum HOM05D001993 ORTHO05D009037 8.4e-162 574.3 467 69.6
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 1.9e-161 573.2 467 70.7
Aqoxy7G03544 Aquilegia oxysepala HOM05D001993 ORTHO05D009037 7.1e-161 571.2 469 72.3
THA.LOC104808190 Tarenaya hassleriana HOM05D001993 ORTHO05D009037 1.0e-159 567.4 398 69.6
ECA246G3767 Erigeron canadensis HOM05D001993 ORTHO05D009037 5.1e-159 565.1 467 66.6
Nitab4.5_0005460g0010 Nicotiana tabacum HOM05D001993 ORTHO05D009037 6.6e-159 564.7 467 68.5
AT1G80570 Arabidopsis thaliana HOM05D001993 ORTHO05D009037 8.7e-159 564.3 467 69.2
Actinidia30712 Actinidia chinensis HOM05D001993 ORTHO05D009037 1.5e-158 563.5 417 78.7
PGR031G2325 Punica granatum HOM05D001993 ORTHO05D009037 1.5e-158 563.5 467 73.4
GSVIVG01017521001 Vitis vinifera HOM05D001993 ORTHO05D009037 1.5e-158 563.5 467 72.2
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 1.9e-158 563.1 467 66.6
AL2G40860 Arabidopsis lyrata HOM05D001993 ORTHO05D009037 1.3e-157 560.5 467 66.8
arahy.Tifrunner.gnm1.ann1.8N7B8R Arachis hypogaea HOM05D001993 ORTHO05D009037 1.4e-156 557.0 466 71.5
SEGI_33239 Sequoiadendron giganteum HOM05D001993 ORTHO05D009037 4.0e-156 555.4 467 68.7
Ah.01g006660 Amaranthus hybridus HOM05D001993 ORTHO05D009037 4.9e-154 548.5 467 70.2
BcaC03g15951 Brassica carinata HOM05D001993 ORTHO05D009037 2.4e-153 546.2 467 68.7
AUR62016603 Chenopodium quinoa HOM05D001993 ORTHO05D009037 2.7e-152 542.7 376 70.7
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 1.3e-151 540.4 467 68.1
BcaB05g25256 Brassica carinata HOM05D001993 ORTHO05D009037 5.1e-151 538.5 468 71.6
AUR62011454 Chenopodium quinoa HOM05D001993 ORTHO05D009037 2.5e-150 536.2 372 70.4
Thhalv10018507m.g Eutrema salsugineum HOM05D001993 ORTHO05D009037 2.5e-150 536.2 468 65.8
Carub.0002s2697 Capsella rubella HOM05D001993 ORTHO05D009037 1.8e-148 530.0 467 62.5
unitig_0.g1110 Utricularia gibba HOM05D001993 ORTHO05D009037 1.5e-147 526.9 466 67.2
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 2.9e-146 522.7 467 66.2
Sp5g35200 Schrenkiella parvula HOM05D001993 ORTHO05D009037 5.1e-143 511.9 467 61.0
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 1.1e-142 510.8 325 78.2
CARHR073940 Cardamine hirsuta HOM05D001993 ORTHO05D009037 9.0e-132 474.6 468 62.6
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 9.3e-129 464.5 467 62.5
Sc12g0006740 Simmondsia chinensis HOM05D001993 ORTHO05D009037 2.7e-128 463.0 327 69.1
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 4.8e-125 452.2 466 61.6
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 9.0e-124 448.0 467 61.5
Hund06538 Selenicereus undatus HOM05D001993 ORTHO05D009037 7.2e-121 438.3 309 70.2
Nn2g12225 Nelumbo nucifera HOM05D001993 ORTHO05D009037 6.3e-117 425.2 369 61.2
Nn2g12227 Nelumbo nucifera HOM05D001993 ORTHO05D009037 2.2e-109 400.2 401 55.1
SalBow6G3135 Salvia bowleyana HOM05D001993 ORTHO05D009037 6.5e-106 388.7 270 70.4
FAN05G0349 Fragaria x ananassa HOM05D001993 ORTHO05D009037 3.0e-95 353.2 391 63.4
SMO137G0150 Selaginella moellendorffii HOM05D001993 ORTHO05D009037 2.5e-81 307.0 400 43.2
FAN02G3408 Fragaria x ananassa HOM05D001993 ORTHO05D009037 2.4e-76 290.4 214 68.7
Os12g0516900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.3e-73 279.6 392 41.3
Os12g0517000 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 8.0e-72 275.4 402 40.8
Os12g0517100 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.9e-69 266.2 408 39.2
Os04g0370600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 8.3e-69 265.4 405 38.0
Os04g0370500 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.7e-53 214.5 409 35.7
Mapoly0145s0024 Marchantia polymorpha HOM05D001993 ORTHO05D009037 2.5e-49 200.7 408 32.8
Os02g0798900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.1e-44 185.3 196 49.5
Os12g0526600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 5.1e-42 176.4 203 43.8
Os04g0371600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.1e-36 158.7 293 35.8
BcaB05g22992 Brassica carinata HOM05D001993 ORTHO05D009037 5.1e-34 149.8 134 54.5
Os04g0370300 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.0e-31 140.2 194 40.2
Os02g0798800 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.3e-21 108.6 176 36.9
Ah.15g090380 Amaranthus hybridus HOM05D002125 ORTHO05D002105 3.9e-10 70.5 404 22.8
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 1.5e-09 68.6 242 27.3
SEGI_05713 Sequoiadendron giganteum HOM05D001905 ORTHO05D001820 1.9e-09 68.2 397 23.4
Ca_13256_v3 Cicer arietinum L. HOM05D001905 ORTHO05D001820 2.5e-09 67.8 430 24.0
Glyma.06G318100 Glycine max HOM05D002503 ORTHO05D002810 3.3e-09 67.4 420 28.8
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 4.3e-09 67.0 268 24.3
Medtr1g018790 Medicago truncatula HOM05D001905 ORTHO05D001820 5.7e-09 66.6 428 23.6
Psat6g015040 Pisum sativum HOM05D001905 ORTHO05D001820 1.3e-08 65.5 428 24.3
MELO3C015287.2 Cucumis melo HOM05D002125 ORTHO05D002105 1.6e-08 65.1 306 23.5
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 2.2e-08 64.7 331 24.2
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 2.2e-08 64.7 331 24.2
MD02G1178100 Malus domestica HOM05D001905 ORTHO05D001820 2.8e-08 64.3 441 24.3
Aqoxy6G02895 Aquilegia oxysepala HOM05D001905 ORTHO05D001820 3.7e-08 63.9 349 24.9
Hund03802 Selenicereus undatus HOM05D002125 ORTHO05D002105 3.7e-08 63.9 335 22.4
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 3.7e-08 63.9 278 24.8
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 4.8e-08 63.5 293 24.9
Potri.005G141800 Populus trichocarpa HOM05D001905 ORTHO05D001820 6.3e-08 63.2 353 22.1
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.4e-07 61.2 346 21.1
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 2.4e-07 61.2 293 24.2
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 2.4e-07 61.2 298 25.5
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 3.1e-07 60.8 312 23.4
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 3.1e-07 60.8 311 22.8
AagrBONN_evm.TU.Sc2ySwM_344.1231 Anthoceros agrestis HOM05D001905 ORTHO05D001820 4.1e-07 60.5 388 22.7
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 4.1e-07 60.5 431 20.4
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 4.1e-07 60.5 310 23.5
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 6.9e-07 59.7 307 23.8
ClCG02G008040 Citrullus lanatus HOM05D001905 ORTHO05D001820 6.9e-07 59.7 324 23.8
COL.COLO4_11476 Corchorus olitorius HOM05D001905 ORTHO05D001820 6.9e-07 59.7 425 22.4
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 9.0e-07 59.3 292 22.3
Cfa006657 Carpinus fangiana HOM05D002125 ORTHO05D002105 1.5e-06 58.5 363 23.4
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 1.5e-06 58.5 293 23.5
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 1.5e-06 58.5 328 23.8
Prupe.1G448200 Prunus persica HOM05D002813 ORTHO05D003203 1.5e-06 58.5 316 25.0
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 1.5e-06 58.5 304 24.3
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 2.0e-06 58.2 311 24.1
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 2.6e-06 57.8 294 24.1
Nitab4.5_0002304g0010 Nicotiana tabacum HOM05D002503 ORTHO05D002810 2.6e-06 57.8 412 21.8
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.6e-06 57.8 362 23.8
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 3.4e-06 57.4 310 23.9
arahy.Tifrunner.gnm1.ann1.2F3432 Arachis hypogaea HOM05D001219 ORTHO05D001017 5.9e-06 56.6 355 25.1
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 5.9e-06 56.6 293 26.6
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 7.7e-06 56.2 309 23.6
SMO117G0222 Selaginella moellendorffii HOM05D001905 ORTHO05D001820 7.7e-06 56.2 385 21.3


User provided reference genes

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