Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 4.0e-159 564.7 283 100.0
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.3e-112 410.2 262 80.2
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.1e-108 397.1 276 76.8
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 6.1e-107 391.3 281 74.7
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 6.7e-106 387.9 263 74.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.2e-104 382.9 223 84.3
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.3e-104 381.3 293 67.9
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 8.2e-104 380.9 223 83.9
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.2e-104 380.9 223 83.9
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 5.3e-103 378.3 211 87.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.2e-102 377.1 273 72.2
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.6e-102 376.7 229 80.3
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.7e-102 374.4 267 71.9
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 7.7e-102 374.4 221 81.9
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.0e-101 374.0 258 73.3
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.0e-101 374.0 214 84.6
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.7e-101 373.2 247 76.1
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.7e-101 373.2 244 76.2
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 2.2e-101 372.9 214 84.1
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.8e-101 372.1 213 84.5
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 8.5e-101 370.9 213 84.5
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.5e-101 370.9 237 77.2
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.5e-100 370.2 229 78.2
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-100 369.8 250 74.8
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.5e-100 369.4 213 85.4
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.2e-100 369.0 255 72.2
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 4.2e-100 368.6 217 82.9
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.4e-100 367.5 296 68.6
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.6e-99 366.7 275 69.5
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-99 366.3 250 73.2
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-99 366.3 211 83.9
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-99 366.3 251 72.9
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-99 366.3 250 73.2
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-99 366.3 211 83.9
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.1e-99 366.3 251 72.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.7e-99 365.9 244 77.0
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 3.6e-99 365.5 262 71.4
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 4.7e-99 365.2 250 73.2
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 4.7e-99 365.2 213 83.1
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.0e-98 364.0 211 83.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.0e-98 364.0 235 77.9
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.4e-98 363.6 267 69.3
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.8e-98 363.2 212 83.5
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 3.0e-98 362.5 259 71.4
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 3.0e-98 362.5 214 82.2
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 4.0e-98 362.1 259 71.4
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 8.8e-98 360.9 249 74.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 8.8e-98 360.9 240 74.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.6e-97 359.4 229 76.9
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 7.5e-97 357.8 259 70.7
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 9.8e-97 357.5 274 71.2
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.3e-96 357.1 211 83.4
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.3e-96 357.1 217 80.2
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.3e-96 357.1 217 80.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.3e-96 357.1 230 77.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.8e-96 355.9 213 81.2
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.8e-96 355.9 267 69.3
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.8e-96 355.9 227 77.5
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.7e-96 355.5 214 79.9
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 4.8e-96 355.1 256 71.5
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 8.3e-96 354.4 244 73.8
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.1e-95 354.0 213 79.8
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.1e-95 352.1 274 70.4
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 4.1e-95 352.1 211 82.5
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 4.1e-95 352.1 267 69.3
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.2e-94 350.5 225 76.4
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 3.5e-94 349.0 279 67.7
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 7.7e-94 347.8 212 80.2
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 7.7e-94 347.8 212 80.2
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.7e-93 346.7 213 79.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 2.3e-93 346.3 212 79.7
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.8e-93 345.5 212 79.2
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 3.8e-93 345.5 213 77.9
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 6.5e-93 344.7 224 75.9
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 6.5e-93 344.7 234 71.8
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 8.6e-93 344.4 220 76.8
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-92 344.0 258 67.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.9e-92 343.2 219 76.3
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.5e-92 342.8 236 71.6
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 5.5e-92 341.7 212 78.8
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 7.2e-92 341.3 212 76.9
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.5e-92 340.9 219 75.8
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.6e-91 340.1 258 67.1
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-91 339.3 212 78.3
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.8e-91 339.3 229 71.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 3.6e-91 339.0 255 68.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 4.7e-91 338.6 225 75.1
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 4.0e-90 335.5 223 72.2
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 5.2e-90 335.1 212 77.8
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 3.4e-89 332.4 214 76.6
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.8e-89 330.9 249 69.9
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.7e-88 330.1 263 64.6
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 2.2e-88 329.7 213 77.5
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 8.3e-88 327.8 214 76.6
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.4e-87 327.0 221 73.8
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.4e-87 327.0 274 64.6
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.8e-87 326.6 211 77.3
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.8e-87 326.6 220 73.2
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.4e-87 326.2 218 75.7
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.4e-87 326.2 246 68.7
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.4e-87 326.2 211 77.3
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 3.1e-87 325.9 239 70.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.4e-87 325.1 259 66.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.4e-87 325.1 211 76.3
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.2e-86 323.9 268 63.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.0e-86 323.2 268 65.3
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.5e-86 322.4 268 65.3
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.5e-86 322.4 268 65.3
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 7.8e-86 321.2 257 65.4
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.0e-85 320.9 249 67.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.7e-85 320.1 213 74.2
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.3e-85 319.7 248 68.1
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.3e-85 319.7 211 72.0
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.9e-85 319.3 214 74.8
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.9e-85 319.3 212 74.5
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 5.0e-85 318.5 250 65.2
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.5e-84 317.0 262 64.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.9e-84 316.6 274 62.4
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.3e-84 315.8 267 62.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 3.3e-84 315.8 205 75.6
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.6e-83 313.5 243 66.7
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 8.0e-83 311.2 255 63.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.0e-82 310.8 213 72.3
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.8e-82 310.1 174 85.6
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.2e-81 307.4 219 68.5
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 2.0e-81 306.6 219 69.4
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.6e-81 306.2 242 64.0
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 9.8e-81 304.3 214 67.3
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.8e-81 304.3 213 70.0
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.2e-80 303.1 212 71.2
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.9e-80 302.8 234 63.2
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.9e-80 302.8 234 63.2
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 6.4e-80 301.6 234 62.8
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 6.4e-80 301.6 234 62.8
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 6.4e-80 301.6 234 62.8
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 8.3e-80 301.2 213 69.5
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.4e-79 299.7 203 75.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 3.2e-79 299.3 218 71.1
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.0e-77 292.7 177 79.7
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.3e-76 289.3 215 68.8
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.1e-74 284.3 175 78.9
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.1e-66 257.7 206 63.6
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.0e-65 253.4 276 54.3
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.0e-65 253.4 224 62.1
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.4e-65 252.7 214 60.3
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 2.4e-63 246.5 278 51.1
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 7.8e-62 241.5 149 81.2
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 2.3e-61 240.0 149 80.5
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.1e-59 233.4 228 53.9
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.4e-58 230.7 190 60.5
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 2.2e-56 223.4 132 82.6
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 3.5e-54 216.1 214 54.7
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 4.4e-49 199.1 213 50.2
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 4.9e-48 195.7 214 47.7
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-41 174.1 192 52.6
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.4e-39 167.5 177 48.0
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.2e-39 166.0 177 53.1
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.4e-28 128.6 75 84.0
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 2.1e-27 127.1 111 61.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.1e-18 96.3 61 73.8
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 4.6e-14 82.8 89 47.2
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 5.1e-13 79.3 44 88.6
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 4.3e-12 76.3 65 60.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.4e-10 71.2 76 51.3
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.4e-10 70.5 75 48.0
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.5e-09 67.8 81 49.4
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.0e-08 62.8 40 72.5


User provided reference genes

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