Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 4.3e-74 281.2 136 100.0
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 5.8e-47 191.0 113 82.3
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 7.6e-47 190.7 113 81.4
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 4.9e-46 188.0 113 80.5
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 4.9e-46 188.0 113 81.4
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 1.1e-45 186.8 113 80.5
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 1.1e-45 186.8 113 80.5
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 1.4e-45 186.4 113 80.5
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 2.4e-45 185.7 113 78.8
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 2.4e-45 185.7 113 80.5
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 3.2e-45 185.3 113 79.6
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 7.1e-45 184.1 113 79.6
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 7.1e-45 184.1 113 79.6
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 9.3e-45 183.7 113 78.8
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.2e-44 183.3 113 77.9
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 1.2e-44 183.3 113 78.8
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.2e-44 183.3 113 78.8
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.2e-44 183.3 113 78.8
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 1.2e-44 183.3 113 77.9
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 1.6e-44 183.0 113 77.9
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.1e-44 182.6 113 78.8
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 2.1e-44 182.6 113 79.6
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 2.1e-44 182.6 109 81.7
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 2.1e-44 182.6 113 77.9
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.1e-44 182.6 113 77.0
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 2.7e-44 182.2 113 78.8
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 6.0e-44 181.0 110 80.9
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 6.0e-44 181.0 110 80.9
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 6.0e-44 181.0 113 77.0
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 1.0e-43 180.3 113 77.0
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 1.0e-43 180.3 113 77.0
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 1.3e-43 179.9 113 76.1
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 1.3e-43 179.9 113 77.0
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 1.3e-43 179.9 113 77.0
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 1.8e-43 179.5 113 76.1
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.3e-43 179.1 111 78.4
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 3.0e-43 178.7 126 71.4
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 3.0e-43 178.7 113 75.2
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.0e-43 178.7 113 76.1
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 3.0e-43 178.7 113 76.1
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 3.0e-43 178.7 113 76.1
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 3.9e-43 178.3 113 77.0
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 3.9e-43 178.3 113 77.0
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 5.1e-43 177.9 113 75.2
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.7e-43 177.6 113 77.0
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 8.7e-43 177.2 130 68.5
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 8.7e-43 177.2 113 74.3
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 8.7e-43 177.2 113 74.3
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 8.7e-43 177.2 110 77.3
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 8.7e-43 177.2 113 75.2
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 8.7e-43 177.2 113 75.2
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 1.5e-42 176.4 113 76.1
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 1.5e-42 176.4 113 77.0
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 1.5e-42 176.4 113 77.0
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 1.5e-42 176.4 113 74.3
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 1.9e-42 176.0 113 73.5
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.9e-42 176.0 113 76.1
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 2.5e-42 175.6 113 73.5
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 2.5e-42 175.6 148 60.8
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 2.5e-42 175.6 113 73.5
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 2.5e-42 175.6 113 76.1
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.3e-42 175.3 113 76.1
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 3.3e-42 175.3 113 75.2
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 3.3e-42 175.3 113 75.2
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 5.6e-42 174.5 113 75.2
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 7.4e-42 174.1 113 75.2
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 9.6e-42 173.7 113 74.3
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.3e-41 173.3 113 75.2
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 1.3e-41 173.3 113 75.2
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 1.3e-41 173.3 113 74.3
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 2.1e-41 172.6 113 72.6
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 2.8e-41 172.2 126 69.0
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 72.6
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 2.8e-41 172.2 120 70.8
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.8e-41 172.2 113 73.5
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 3.7e-41 171.8 131 64.9
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 3.7e-41 171.8 113 72.6
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 3.7e-41 171.8 131 64.9
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 3.7e-41 171.8 131 64.9
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 3.7e-41 171.8 113 72.6
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 4.8e-41 171.4 113 71.7
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.2e-41 171.0 109 76.1
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 6.2e-41 171.0 113 73.5
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 8.1e-41 170.6 110 76.4
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 8.1e-41 170.6 113 73.5
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 1.1e-40 170.2 113 73.5
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 1.8e-40 169.5 110 72.7
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 2.4e-40 169.1 113 71.7
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.4e-40 169.1 113 71.7
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 2.4e-40 169.1 113 72.6
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 2.4e-40 169.1 110 72.7
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 3.1e-40 168.7 113 72.6
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 4.0e-40 168.3 110 72.7
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 4.0e-40 168.3 113 72.6
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 4.0e-40 168.3 113 72.6
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 5.3e-40 167.9 113 71.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.2e-39 166.8 113 70.8
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 1.2e-39 166.8 113 71.7
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 1.5e-39 166.4 126 66.7
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.5e-39 166.4 111 71.2
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 2.0e-39 166.0 108 75.9
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 3.4e-39 165.2 126 65.9
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 5.8e-39 164.5 113 69.9
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.3e-38 163.3 113 68.1
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.4e-38 161.0 113 67.3
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 8.4e-38 160.6 113 67.3
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 8.4e-38 160.6 110 70.0
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.4e-37 159.8 113 66.4
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.9e-37 159.5 113 66.4
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 3.2e-37 158.7 109 74.3
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 9.3e-37 157.1 123 64.2
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.9e-35 151.8 109 68.8
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 5.6e-34 147.9 163 49.1
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.1e-32 143.7 113 61.9
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 2.4e-32 142.5 113 61.9
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 5.3e-32 141.4 113 60.2
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 5.8e-31 137.9 104 64.4
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 1.7e-30 136.3 100 67.0
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.6e-28 129.8 119 57.1
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 7.9e-28 127.5 113 53.1
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.0e-27 127.1 95 65.3
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 2.5e-26 122.5 115 53.9
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 2.5e-26 122.5 113 50.4
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 3.7e-25 118.6 93 62.4
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.9e-22 109.0 59 84.7
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.9e-22 109.0 59 84.7
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.2e-21 105.5 74 70.3
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.2e-20 103.6 59 79.7
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 1.6e-20 103.2 114 47.4
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 2.7e-20 102.4 59 78.0
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 3.0e-19 99.0 56 80.4
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 2.5e-18 95.9 68 70.6
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.5e-15 86.7 50 82.0
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 2.0e-15 86.3 46 84.8
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.3e-14 83.6 65 66.2
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.5e-14 81.3 60 68.3
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 1.6e-12 76.6 46 78.3
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 4.7e-12 75.1 45 75.6
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 7.9e-12 74.3 41 80.5
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.0e-11 73.9 42 78.6
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 1.7e-09 66.6 57 52.6
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 3.7e-09 65.5 32 90.6
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 1.2e-07 60.5 103 35.0


User provided reference genes

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