Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 1.5e-40 169.1 89 100.0
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 4.8e-18 94.4 93 66.7
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 3.5e-16 88.2 85 65.9
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 5.0e-15 84.3 96 63.5
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 3.3e-14 81.6 96 58.3
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 7.2e-14 80.5 56 75.0
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 2.1e-13 79.0 95 54.7
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 4.7e-13 77.8 95 56.8
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 6.1e-13 77.4 77 55.8
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 1.0e-12 76.6 47 83.0
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 1.4e-12 76.3 98 53.1
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 1.4e-12 76.3 61 67.2
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 2.3e-12 75.5 95 54.7
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 2.3e-12 75.5 95 54.7
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 2.3e-12 75.5 69 62.3
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 3.0e-12 75.1 95 53.7
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 3.0e-12 75.1 57 71.9
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 5.2e-12 74.3 96 52.1
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 5.2e-12 74.3 95 53.7
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 6.8e-12 73.9 57 71.9
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 6.8e-12 73.9 48 81.2
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 8.9e-12 73.6 62 64.5
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.2e-11 73.2 95 52.6
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 1.5e-11 72.8 90 56.7
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 2.6e-11 72.0 48 77.1
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 4.4e-11 71.2 72 58.3
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 7.5e-11 70.5 98 52.0
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 7.5e-11 70.5 98 52.0
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 7.5e-11 70.5 98 52.0
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 9.8e-11 70.1 51 70.6
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 9.8e-11 70.1 72 62.5
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 1.3e-10 69.7 94 53.2
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 1.7e-10 69.3 44 81.8
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 2.2e-10 68.9 48 75.0
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 2.8e-10 68.6 77 53.2
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 2.8e-10 68.6 74 55.4
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 3.7e-10 68.2 94 45.7
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 3.7e-10 68.2 46 71.7
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 6.3e-10 67.4 77 53.2
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 6.3e-10 67.4 52 65.4
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 8.3e-10 67.0 60 60.0
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 1.1e-09 66.6 77 50.6
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 1.4e-09 66.2 49 69.4
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 1.8e-09 65.9 44 75.0
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 2.4e-09 65.5 77 55.8
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 4.1e-09 64.7 44 72.7
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 5.4e-09 64.3 86 50.0
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 5.4e-09 64.3 45 71.1
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 9.2e-09 63.5 63 58.7
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 1.6e-08 62.8 41 78.0
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 7.8e-08 60.5 45 71.1
Lalb_Chr25g0279481 Lupinus albus HOM05D007863 ORTHO05D009265 1.0e-07 60.1 88 44.3
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 1.7e-07 59.3 34 91.2
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 2.3e-07 58.9 43 69.8
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 2.3e-07 58.9 45 68.9
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 2.9e-07 58.5 45 71.1
Phvul.005G176000 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 2.9e-07 58.5 52 61.5
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 6.6e-07 57.4 82 45.1
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 6.6e-07 57.4 45 66.7
Glyma.07G031800 Glycine max HOM05D007863 ORTHO05D009265 1.5e-06 56.2 78 46.2
Sopen03g035410 Solanum pennellii HOM05D007863 ORTHO05D009265 1.5e-06 56.2 82 47.6
ClCG09G002780 Citrullus lanatus HOM05D007863 ORTHO05D009265 1.9e-06 55.8 34 79.4
Aqoxy7G03727 Aquilegia oxysepala HOM05D007863 ORTHO05D009265 2.5e-06 55.5 35 77.1
Migut.D01060 Erythranthe guttata HOM05D007863 ORTHO05D009265 2.5e-06 55.5 39 71.8
Sed0015441 Sechium edule HOM05D007863 ORTHO05D009265 2.5e-06 55.5 34 79.4
AT1G15385 Arabidopsis thaliana HOM05D010306 ORTHO05D009265 4.3e-06 54.7 52 61.5
CsaV3_7G032550 Cucumis sativus L. HOM05D007863 ORTHO05D009265 4.3e-06 54.7 34 76.5
Lalb_Chr04g0262451 Lupinus albus HOM05D007863 ORTHO05D009265 4.3e-06 54.7 92 43.5
ATR1156G029 Amborella trichopoda HOM05D007863 ORTHO05D009265 5.6e-06 54.3 67 49.3
MELO3C023407.2 Cucumis melo HOM05D007863 ORTHO05D009265 5.6e-06 54.3 34 76.5
Nitab4.5_0003722g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 5.6e-06 54.3 36 80.6
Sed0016812 Sechium edule HOM05D007863 ORTHO05D009265 9.5e-06 53.5 32 81.2


User provided reference genes

Program Settings