Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 0.0e+00 1377.1 725 100.0
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 0.0e+00 1078.9 747 79.1
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 0.0e+00 1075.5 744 78.8
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 3.9e-291 1004.6 751 74.6
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.6e-279 965.3 746 68.4
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.1e-276 955.7 795 67.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.1e-273 945.7 743 67.8
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 1.2e-271 939.9 754 67.1
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 7.6e-271 937.2 742 68.1
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 2.9e-270 935.3 742 67.5
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.1e-269 933.3 760 66.7
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.3e-265 919.8 742 66.2
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 3.7e-265 918.3 746 66.5
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.1e-264 916.8 750 66.8
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.7e-263 910.6 746 66.2
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.7e-262 909.4 739 65.8
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.9e-261 906.0 745 66.4
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.7e-259 897.5 716 67.2
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.1e-258 896.7 710 67.5
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 3.3e-258 895.2 741 66.1
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.4e-258 894.8 776 63.3
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.4e-258 894.8 749 65.3
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.4e-258 894.0 745 65.2
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.8e-257 891.3 716 67.3
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.1e-256 890.2 776 63.0
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.0e-255 885.9 747 66.9
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.1e-252 875.9 797 61.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.7e-252 875.5 777 63.8
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.3e-251 872.5 777 63.7
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.0e-250 869.4 738 63.1
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 2.2e-249 865.9 742 62.5
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.8e-249 865.5 767 63.0
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 3.8e-246 855.1 738 62.5
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 8.5e-246 854.0 746 63.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 3.6e-244 848.6 733 65.1
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 6.1e-244 847.8 740 63.2
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 8.0e-244 847.4 752 64.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.2e-242 843.6 757 63.7
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.2e-241 839.3 754 63.1
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 2.8e-241 839.0 804 61.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 6.3e-241 837.8 753 65.1
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 7.7e-239 830.9 850 57.9
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 2.2e-238 829.3 741 61.1
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 3.2e-237 825.5 738 62.6
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.2e-237 825.5 850 57.6
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.7e-236 822.4 817 57.5
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.6e-234 815.8 746 61.3
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 7.5e-234 814.3 823 58.1
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 8.6e-230 800.8 772 58.8
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 8.6e-230 800.8 642 66.0
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 3.2e-229 798.9 821 57.1
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 4.4e-226 788.5 716 62.6
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 2.2e-225 786.2 835 54.9
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 2.4e-224 782.7 806 55.0
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.4e-224 782.7 815 55.1
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 7.8e-223 777.7 818 54.4
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 2.3e-222 776.2 818 54.8
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.3e-222 776.2 737 61.6
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.9e-222 775.8 700 61.3
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 3.8e-222 775.4 709 61.6
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 4.3e-221 771.9 745 57.7
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.7e-220 768.5 810 55.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.0e-219 767.3 768 57.0
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.8e-219 766.5 699 61.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 9.8e-218 760.8 650 64.3
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 4.9e-217 758.4 766 56.5
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.8e-216 756.5 826 55.4
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 5.4e-216 755.0 743 57.7
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 5.4e-216 755.0 741 57.6
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 7.0e-216 754.6 800 55.0
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 2.0e-215 753.1 812 56.9
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.7e-215 752.7 738 57.7
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 4.6e-215 751.9 727 57.8
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 7.8e-215 751.1 701 61.6
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.0e-214 750.7 743 56.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 3.9e-214 748.8 741 55.7
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.5e-213 746.9 740 56.6
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 2.1e-212 743.0 772 56.1
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.8e-212 742.7 732 56.1
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.8e-212 742.7 721 58.9
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 6.2e-212 741.5 732 57.2
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 8.0e-212 741.1 742 55.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-211 740.7 731 56.9
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 4.0e-211 738.8 767 55.1
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 9.8e-210 734.2 733 56.5
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 8.3e-209 731.1 753 54.3
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.2e-208 729.2 782 53.8
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.2e-207 727.2 814 53.8
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.0e-207 726.5 846 53.1
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.0e-206 724.2 713 62.0
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 2.3e-206 723.0 731 56.9
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.3e-206 723.0 580 65.3
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.9e-205 719.9 733 55.0
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 9.5e-205 717.6 731 55.5
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-202 710.7 732 55.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 2.6e-202 709.5 722 55.3
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 9.9e-202 707.6 722 55.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 8.3e-201 704.5 725 55.2
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 8.3e-201 704.5 775 55.2
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-200 703.7 732 55.1
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 4.1e-200 702.2 724 55.7
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-199 700.7 723 55.6
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.5e-197 693.7 723 54.9
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.5e-197 693.7 608 61.5
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 9.5e-197 691.0 731 54.0
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 7.6e-194 681.4 643 57.9
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.2e-193 679.9 730 54.1
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 3.3e-189 666.0 713 58.9
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.3e-185 654.1 698 55.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.1e-180 636.7 655 55.6
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.4e-176 624.0 834 49.6
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 3.1e-171 606.3 616 52.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 6.9e-171 605.1 833 46.6
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 9.9e-170 601.3 843 44.6
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.2e-164 582.0 445 64.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.0e-154 550.4 726 46.6
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 3.4e-154 549.7 743 47.2
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.7e-143 512.7 442 58.6
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 3.0e-142 510.0 758 43.9
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 3.1e-131 473.4 503 51.7
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 8.5e-121 438.7 768 39.2
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.2e-112 409.1 767 38.5
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 5.6e-104 382.9 615 39.7
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.5e-96 357.5 299 60.5
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 7.0e-91 339.3 506 41.3
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-87 328.6 479 40.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.8e-87 327.4 522 47.3
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.7e-87 326.6 481 40.5
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.9e-80 304.7 491 39.9
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.6e-80 303.1 676 34.6
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.1e-79 299.3 435 38.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.8e-78 296.2 482 37.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.8e-78 296.2 482 37.3
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.8e-77 293.1 467 39.2
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.2e-75 287.0 489 36.6
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.1e-74 284.6 384 51.3
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.3e-73 282.0 618 38.7
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 7.6e-53 213.0 190 51.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.3e-49 202.2 390 43.6
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.7e-40 169.5 205 51.7
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 7.9e-34 149.8 419 35.6
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-29 136.0 85 68.2
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.9e-20 104.8 209 36.4
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 4.2e-19 100.9 71 69.0
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.8e-15 88.2 341 32.3
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 3.7e-15 87.8 81 50.6
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 3.8e-12 77.8 79 55.7
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.6e-10 72.4 74 47.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.6e-10 72.4 74 47.3
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.0e-10 70.1 77 41.6
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.8e-09 68.9 58 50.0
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.8e-09 67.0 53 47.2
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.5e-08 65.9 49 65.3
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.3e-07 62.8 42 71.4
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 4.8e-07 60.8 65 53.8


User provided reference genes

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