Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 0.0e+00 1456.0 754 100.0
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.1e-224 783.9 928 54.1
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 2.6e-157 560.1 907 43.2
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.2e-144 518.1 851 42.7
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.9e-139 500.7 768 44.3
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.2e-138 498.0 764 44.1
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 8.0e-138 495.4 762 43.8
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 2.0e-133 480.7 761 43.6
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.9e-131 474.2 860 40.6
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.9e-131 474.2 770 42.1
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 4.7e-130 469.5 775 40.8
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.4e-129 468.0 772 40.4
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.8e-129 467.6 764 42.9
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 2.3e-129 467.2 550 55.3
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 8.9e-129 465.3 783 41.9
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 4.4e-128 463.0 846 40.9
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 4.4e-128 463.0 439 59.5
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.7e-127 459.9 771 41.9
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.7e-127 459.9 771 41.9
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 7.0e-126 455.7 871 39.2
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 7.8e-125 452.2 746 40.9
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.2e-122 444.9 768 41.5
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 2.1e-122 444.1 765 42.7
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 6.1e-122 442.6 828 40.3
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 2.3e-121 440.7 755 40.8
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 8.3e-119 432.2 753 42.2
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.7e-116 424.5 753 41.6
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 9.5e-115 418.7 759 41.9
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 2.0e-112 411.0 796 40.5
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 3.7e-111 406.8 760 39.5
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 6.4e-111 406.0 773 40.8
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.2e-110 403.7 822 38.4
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 4.1e-110 403.3 762 40.2
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 9.2e-110 402.1 720 40.0
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 5.1e-108 396.4 775 38.2
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 3.3e-107 393.7 855 36.8
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 4.3e-107 393.3 778 38.7
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 8.9e-105 385.6 802 36.5
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.0e-104 384.4 756 38.2
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 2.6e-104 384.0 762 38.2
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.4e-102 378.3 791 37.3
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.8e-101 372.5 673 40.7
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.7e-100 371.3 665 41.1
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 3.9e-100 370.2 784 36.0
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 6.6e-100 369.4 716 40.6
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.8e-98 364.0 665 40.5
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.1e-97 362.1 664 40.8
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 8.9e-97 359.0 717 38.5
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 7.6e-96 355.9 761 37.7
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.8e-95 353.6 766 37.3
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 1.9e-94 351.3 779 35.9
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 5.4e-94 349.7 754 37.1
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 3.5e-93 347.1 763 36.7
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 6.0e-93 346.3 757 36.3
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 1.7e-92 344.7 763 36.4
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.0e-92 344.0 933 33.1
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 5.1e-92 343.2 768 35.4
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.3e-90 338.6 463 45.1
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.8e-90 337.4 760 37.4
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.8e-89 334.7 873 33.6
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.2e-88 332.0 779 34.3
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 7.6e-88 329.3 814 33.4
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 9.9e-88 328.9 777 34.5
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 3.2e-86 323.9 951 32.2
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.0e-85 319.7 672 39.0
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.0e-84 318.9 763 34.7
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.5e-83 315.1 938 32.2
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 7.3e-83 312.8 674 38.4
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 9.6e-83 312.4 731 36.0
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.6e-82 310.5 817 33.9
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 8.1e-82 309.3 824 34.0
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 4.0e-81 307.0 715 34.1
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 4.0e-81 307.0 855 32.5
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 6.9e-81 306.2 767 34.0
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.2e-80 305.4 738 34.7
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 2.0e-80 304.7 754 35.1
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.0e-80 304.7 727 35.8
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 2.6e-80 304.3 778 35.1
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 4.2e-78 297.0 733 35.2
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 7.1e-78 296.2 794 32.2
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.7e-77 294.3 761 32.6
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.0e-76 292.4 790 34.3
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 5.1e-76 290.0 713 35.2
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 8.7e-76 289.3 409 49.4
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 8.7e-76 289.3 418 45.0
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.3e-75 287.3 777 33.8
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.6e-74 285.0 602 39.7
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 5.3e-73 280.0 589 37.2
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.8e-72 276.6 763 33.6
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 7.6e-72 276.2 751 32.2
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.2e-71 274.6 627 37.5
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 4.9e-71 273.5 748 31.8
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 8.4e-71 272.7 770 31.8
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 2.3e-68 264.6 784 32.7
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 5.1e-68 263.5 942 29.1
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 4.8e-66 256.9 771 31.9
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.1e-65 254.2 756 33.2
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 5.8e-64 250.0 758 32.5
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.4e-62 245.4 775 30.8
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 7.2e-62 243.0 969 28.1
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 9.3e-62 242.7 821 29.5
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 9.7e-59 232.6 706 29.6
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 4.8e-58 230.3 771 29.1
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 4.1e-57 227.3 600 33.7
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 2.0e-56 224.9 770 29.7
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.6e-56 224.6 822 29.2
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 6.5e-55 219.9 797 30.9
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 6.5e-55 219.9 690 31.0
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 5.5e-54 216.9 499 34.3
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 6.1e-53 213.4 766 29.9
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.8e-52 211.8 775 29.4
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 5.1e-52 210.3 773 29.8
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 3.3e-51 207.6 764 28.4
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 4.8e-50 203.8 773 29.4
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 3.4e-48 197.6 785 27.8
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 4.5e-48 197.2 780 29.4
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 5.5e-46 190.3 709 29.8
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.6e-45 187.6 347 39.8
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 7.4e-43 179.9 775 27.7
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 7.4e-43 179.9 781 28.3
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.2e-40 172.6 362 39.5
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 1.7e-39 168.7 395 36.5
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.8e-36 158.7 508 30.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.8e-34 150.6 623 28.7
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 1.4e-28 132.5 122 63.1
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.6e-27 128.3 219 42.0
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 6.3e-26 123.6 787 26.7
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.9e-22 112.1 185 41.1
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 9.4e-22 109.8 130 53.8
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 9.4e-22 109.8 841 23.7
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 2.1e-21 108.6 586 24.4
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 2.1e-21 108.6 714 25.6
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.3e-18 99.4 97 54.6
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 3.7e-18 97.8 173 39.3
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 6.3e-18 97.1 224 35.3
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 8.3e-18 96.7 670 24.0
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 3.1e-17 94.7 157 38.9
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 5.4e-17 94.0 152 38.8
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 5.4e-17 94.0 147 39.5
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.5e-16 91.3 107 49.5
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.0e-15 89.7 136 43.4
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 2.9e-15 88.2 83 49.4
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 5.7e-11 73.9 51 64.7
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 7.5e-11 73.6 84 44.0
MCO08G035 Micromonas commoda HOM05D004831 ORTHO05D003975 8.6e-07 60.1 76 48.7


User provided reference genes

Program Settings