Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 2.6e-77 292.0 144 100.0
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.3e-46 189.1 140 72.9
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.3e-46 189.1 140 72.9
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.1e-31 139.4 128 61.7
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 8.9e-30 134.0 156 51.3
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 2.0e-29 132.9 81 85.2
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 2.6e-29 132.5 151 53.0
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.7e-28 129.8 156 52.6
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.7e-28 129.8 160 50.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 6.4e-28 127.9 156 50.6
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 8.4e-28 127.5 156 48.1
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.4e-27 126.7 156 49.4
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 3.2e-27 125.6 156 50.0
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 3.2e-27 125.6 156 49.4
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.1e-27 125.2 156 48.7
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 4.1e-27 125.2 156 48.7
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 4.1e-27 125.2 156 48.7
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 9.2e-27 124.0 156 48.7
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 2.1e-26 122.9 156 48.1
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 2.7e-26 122.5 156 48.7
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 3.5e-26 122.1 156 46.8
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 4.6e-26 121.7 151 50.3
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 4.6e-26 121.7 142 50.7
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 7.8e-26 120.9 154 46.8
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 7.8e-26 120.9 156 48.7
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.3e-25 120.2 156 47.4
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 2.3e-25 119.4 156 48.1
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 2.3e-25 119.4 156 46.8
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 5.1e-25 118.2 156 46.2
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 5.1e-25 118.2 156 45.5
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 5.1e-25 118.2 156 46.8
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 5.1e-25 118.2 176 42.6
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 5.1e-25 118.2 156 46.8
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 6.6e-25 117.9 156 46.8
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 6.6e-25 117.9 84 73.8
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 8.7e-25 117.5 156 46.8
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 8.7e-25 117.5 157 45.9
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 1.1e-24 117.1 156 47.4
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.1e-24 117.1 156 46.2
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.5e-24 116.7 156 46.2
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.5e-24 115.9 176 43.2
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 2.5e-24 115.9 156 44.9
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 3.3e-24 115.5 156 44.9
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 3.3e-24 115.5 119 58.0
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 3.3e-24 115.5 156 44.9
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 4.3e-24 115.2 164 44.5
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 4.3e-24 115.2 156 45.5
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 4.3e-24 115.2 156 44.9
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 4.3e-24 115.2 176 43.2
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 4.3e-24 115.2 156 44.2
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 5.6e-24 114.8 156 44.9
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 5.6e-24 114.8 176 42.0
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 7.3e-24 114.4 176 42.6
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 7.3e-24 114.4 176 42.0
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 7.3e-24 114.4 156 45.5
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 9.6e-24 114.0 155 46.5
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 9.6e-24 114.0 74 81.1
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.2e-23 113.6 156 44.9
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.2e-23 113.6 176 42.6
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 1.6e-23 113.2 156 43.6
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.6e-23 113.2 156 45.5
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 1.6e-23 113.2 168 42.3
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 2.1e-23 112.8 154 44.8
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 2.1e-23 112.8 165 43.6
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 2.8e-23 112.5 156 43.6
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 3.6e-23 112.1 156 44.9
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.7e-23 111.7 156 44.2
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 4.7e-23 111.7 176 41.5
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 6.2e-23 111.3 154 44.8
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 8.1e-23 110.9 154 44.2
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.1e-22 110.5 154 44.2
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.4e-22 110.2 119 55.5
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 1.4e-22 110.2 154 43.5
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.4e-22 110.2 176 42.0
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.4e-22 110.2 156 44.2
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.4e-22 110.2 119 53.8
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.8e-22 109.8 154 44.2
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.8e-22 109.8 123 52.8
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 2.4e-22 109.4 154 44.2
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 2.4e-22 109.4 156 44.9
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 2.4e-22 109.4 152 44.1
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 2.4e-22 109.4 152 44.1
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 2.4e-22 109.4 152 44.1
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.4e-22 109.4 156 43.6
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 2.4e-22 109.4 156 42.3
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 5.2e-22 108.2 154 42.9
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 5.2e-22 108.2 156 42.3
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 5.2e-22 108.2 105 61.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 6.9e-22 107.8 156 43.6
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 6.9e-22 107.8 154 42.9
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 6.9e-22 107.8 154 44.2
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 2.0e-21 106.3 152 43.4
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.6e-21 105.9 139 46.8
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 7.6e-21 104.4 119 49.6
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 7.6e-21 104.4 156 42.9
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 9.9e-21 104.0 156 41.7
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.3e-20 103.6 119 49.6
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 1.7e-20 103.2 154 40.3
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.9e-19 99.8 156 41.0
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 4.2e-19 98.6 156 38.5
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.2e-18 97.1 119 47.1
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.2e-18 97.1 120 48.3
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 4.6e-18 95.1 167 37.7
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.7e-17 93.2 152 38.2
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 9.6e-16 87.4 156 41.0
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 3.6e-15 85.5 152 36.8
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 6.2e-15 84.7 152 40.1
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 8.1e-15 84.3 75 58.7
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.2e-13 80.5 107 46.7
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.2e-12 76.3 44 86.4
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 4.9e-12 75.1 75 53.3
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.4e-12 74.7 44 84.1
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 5.4e-11 71.6 42 88.1
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 9.3e-11 70.9 146 32.9
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 1.6e-10 70.1 118 34.7
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 2.7e-10 69.3 130 31.5
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 4.6e-10 68.6 130 30.8
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.3e-09 67.0 149 32.9
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 2.3e-09 66.2 88 45.5
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 3.0e-09 65.9 43 79.1
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 8.1e-07 57.8 37 73.0
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.8e-06 56.6 54 48.1
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.4e-06 56.2 50 54.0
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.3e-06 55.1 42 59.5


User provided reference genes

Program Settings