Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.8e-93 345.9 172 100.0
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.0e-69 265.0 150 87.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 8.9e-69 263.8 150 86.0
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-67 260.0 148 86.5
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.2e-67 259.2 169 76.3
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-67 258.5 150 86.0
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-66 256.5 150 82.7
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 2.4e-66 255.8 150 83.3
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 7.1e-66 254.2 160 78.8
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 9.2e-66 253.8 150 82.0
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.6e-65 253.1 150 80.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 2.1e-65 252.7 150 82.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 2.7e-65 252.3 150 80.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 3.5e-65 251.9 150 81.3
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 7.8e-65 250.8 145 84.1
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 7.8e-65 250.8 150 80.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.0e-64 250.4 155 78.1
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.0e-64 250.4 150 79.3
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.3e-64 250.0 150 82.0
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.3e-64 250.0 150 80.0
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 2.3e-64 249.2 150 79.3
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.3e-64 249.2 150 79.3
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 3.0e-64 248.8 150 80.0
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.0e-64 248.8 150 80.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.0e-64 248.8 150 79.3
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.1e-64 248.1 150 81.3
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.1e-64 248.1 150 79.3
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 5.1e-64 248.1 167 71.9
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.6e-64 247.7 150 78.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 6.6e-64 247.7 150 78.7
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 8.6e-64 247.3 152 79.6
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 8.6e-64 247.3 161 75.8
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 8.6e-64 247.3 150 79.3
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.1e-63 246.9 151 80.8
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.1e-63 246.9 150 79.3
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.5e-63 246.5 150 80.7
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 2.5e-63 245.7 150 76.7
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 2.5e-63 245.7 150 80.0
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.3e-63 245.0 150 79.3
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.3e-63 245.0 145 80.7
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.6e-63 244.6 150 78.7
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 7.3e-63 244.2 150 79.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 7.3e-63 244.2 151 77.5
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 7.3e-63 244.2 150 76.7
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 7.3e-63 244.2 150 76.0
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 7.3e-63 244.2 150 80.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 9.6e-63 243.8 150 77.3
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.2e-62 243.4 150 77.3
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 2.1e-62 242.7 150 77.3
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 2.1e-62 242.7 150 77.3
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.8e-62 242.3 150 75.3
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 2.8e-62 242.3 150 80.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 2.8e-62 242.3 150 77.3
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 3.6e-62 241.9 150 76.7
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.6e-62 241.9 150 78.7
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.6e-62 241.9 150 77.3
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 4.7e-62 241.5 150 77.3
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 4.7e-62 241.5 150 78.0
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 4.7e-62 241.5 150 77.3
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.7e-62 241.5 151 76.2
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 4.7e-62 241.5 150 76.7
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 6.2e-62 241.1 150 77.3
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 6.2e-62 241.1 149 79.2
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 8.1e-62 240.7 150 78.0
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 8.1e-62 240.7 150 78.0
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 8.1e-62 240.7 150 78.0
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.4e-61 240.0 151 77.5
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 3.1e-61 238.8 147 78.9
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 5.2e-61 238.0 150 74.7
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 5.2e-61 238.0 150 74.7
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 5.2e-61 238.0 150 75.3
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 6.9e-61 237.7 149 76.5
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 6.9e-61 237.7 151 78.1
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 9.0e-61 237.3 150 77.3
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.2e-60 236.9 150 78.7
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.2e-60 236.9 150 78.0
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.5e-60 236.5 148 80.4
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.5e-60 236.5 150 76.0
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 5.8e-60 234.6 150 75.3
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-59 233.4 161 71.4
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.3e-59 233.4 150 78.0
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.7e-59 233.0 152 75.0
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.7e-59 233.0 152 75.0
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.2e-59 232.6 150 76.7
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 3.8e-59 231.9 150 76.0
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 3.8e-59 231.9 150 74.0
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.9e-59 231.5 152 74.3
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 4.9e-59 231.5 150 75.3
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 6.4e-59 231.1 152 73.7
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 8.4e-59 230.7 150 76.0
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.1e-58 230.3 150 72.0
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.4e-58 229.2 150 76.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 4.2e-58 228.4 149 73.2
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.4e-58 228.0 152 74.3
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 5.4e-58 228.0 150 71.3
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 9.3e-58 227.3 150 70.7
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 4.6e-57 224.9 150 75.3
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 6.0e-57 224.6 150 72.0
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 7.8e-57 224.2 152 69.7
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 7.8e-57 224.2 150 69.3
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.0e-56 223.8 150 71.3
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.0e-56 223.8 150 71.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.3e-56 223.4 150 71.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.3e-56 222.6 150 70.7
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 2.3e-56 222.6 150 70.0
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.3e-56 222.6 148 70.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 3.9e-56 221.9 152 69.1
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.5e-55 219.9 151 68.9
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.9e-55 219.5 150 69.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.9e-55 219.5 150 69.3
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 2.5e-55 219.2 150 66.7
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 4.3e-55 218.4 150 69.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 9.6e-55 217.2 150 70.0
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 2.1e-54 216.1 150 66.7
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 4.8e-54 214.9 150 66.7
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.8e-53 213.0 150 71.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 4.0e-53 211.8 150 67.3
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 9.0e-53 210.7 168 62.5
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.9e-51 204.9 141 70.2
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 8.4e-51 204.1 149 66.4
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 8.4e-51 204.1 149 66.4
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.4e-50 203.4 123 80.5
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.9e-50 203.0 119 80.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.6e-49 199.9 151 64.9
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.6e-49 198.4 151 63.6
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.0e-49 198.0 116 81.9
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 3.0e-48 195.7 145 61.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 5.6e-47 191.4 150 62.0
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.6e-47 191.4 151 63.6
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 6.2e-46 188.0 149 57.0
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.1e-45 187.2 125 70.4
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.1e-45 185.7 108 76.9
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 5.3e-45 184.9 108 75.9
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.8e-38 162.5 149 50.3
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 4.5e-36 155.2 178 51.1
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.5e-35 151.4 95 78.9
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 7.4e-31 137.9 72 84.7
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 4.8e-30 135.2 149 42.3
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.9e-29 131.3 72 84.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-28 129.8 98 66.3
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.3e-27 127.1 72 76.4
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 5.0e-27 125.2 121 54.5
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.4e-26 123.6 144 43.1
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 9.3e-26 120.9 79 74.7
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.6e-25 119.0 64 84.4
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.6e-25 119.0 64 84.4
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 5.7e-23 111.7 75 72.0
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 5.7e-23 111.7 80 72.5
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.4e-21 106.3 89 65.2
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 5.3e-21 105.1 75 74.7
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.7e-17 92.8 149 35.6
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.4e-13 79.7 48 85.4
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-09 67.0 43 74.4


User provided reference genes

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