Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 8.5e-260 899.8 453 100.0
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.6e-224 781.9 450 82.9
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.0e-217 758.4 452 84.1
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.1e-210 735.7 395 85.3
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.1e-210 734.2 449 78.4
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 8.0e-210 733.8 455 77.8
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 4.0e-209 731.5 449 78.4
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 8.9e-209 730.3 395 84.8
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.6e-208 728.8 399 85.7
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 1.4e-206 723.0 395 84.1
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.8e-206 722.6 448 77.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 4.1e-206 721.5 448 77.0
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.2e-205 719.9 395 85.1
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.0e-205 719.2 455 76.0
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.0e-205 719.2 452 77.9
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.7e-205 718.8 455 78.0
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 3.5e-205 718.4 454 76.7
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 3.0e-204 715.3 402 83.8
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 3.9e-204 714.9 456 75.2
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 6.6e-204 714.1 397 82.9
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.9e-203 712.6 400 84.0
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.3e-203 711.8 397 81.6
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.6e-203 711.1 401 81.5
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 7.3e-203 710.7 397 81.6
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.2e-202 709.9 448 75.9
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.1e-202 709.1 397 82.9
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.6e-202 708.4 401 81.3
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 8.0e-202 707.2 448 76.6
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 8.0e-202 707.2 400 82.5
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.1e-201 706.8 400 82.5
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.1e-201 706.8 448 75.2
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.1e-201 705.3 465 74.4
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 3.1e-201 705.3 391 82.4
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 4.0e-201 704.9 450 76.4
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 6.8e-201 704.1 398 82.4
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 8.9e-201 703.7 366 87.2
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.2e-200 703.4 454 74.0
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.2e-200 703.4 453 75.3
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.5e-200 703.0 397 82.1
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.5e-200 703.0 396 83.1
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.0e-200 702.6 451 75.8
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.6e-200 702.2 393 83.2
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.6e-200 702.2 392 82.9
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.4e-200 701.8 397 81.9
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 3.4e-200 701.8 449 74.8
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.8e-200 701.0 395 83.5
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 5.8e-200 701.0 454 74.0
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 9.8e-200 700.3 362 86.7
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 9.8e-200 700.3 454 74.4
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.3e-199 699.9 450 76.4
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.3e-199 699.9 401 81.0
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.7e-199 699.5 454 73.3
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.2e-199 699.1 362 86.7
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.2e-199 699.1 394 82.2
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.2e-199 699.1 451 73.8
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 4.9e-199 698.0 404 79.0
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.4e-199 697.6 450 74.2
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 8.3e-199 697.2 396 81.3
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 8.3e-199 697.2 394 80.7
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 8.3e-199 697.2 461 74.8
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.9e-198 696.0 396 80.6
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.4e-198 695.7 390 82.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.4e-198 695.7 449 75.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 3.2e-198 695.3 400 80.8
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.2e-198 695.3 447 74.7
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.6e-197 693.0 399 79.7
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 3.5e-197 691.8 454 72.5
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 3.5e-197 691.8 449 73.1
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 6.0e-197 691.0 452 73.7
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.7e-196 689.5 400 79.2
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.7e-196 689.5 400 79.2
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 3.9e-196 688.3 395 80.0
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 5.0e-196 688.0 449 73.3
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 6.6e-196 687.6 452 73.9
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.1e-195 686.8 449 73.1
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.5e-195 686.4 453 73.1
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.5e-195 686.4 453 73.1
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-195 686.0 456 72.1
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 2.5e-195 685.6 394 80.7
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.5e-195 685.6 453 73.3
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 3.3e-195 685.3 398 80.4
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.3e-195 684.9 397 79.6
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 5.6e-195 684.5 398 79.9
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 9.5e-195 683.7 449 72.8
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-194 683.3 397 79.6
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.2e-194 683.3 397 79.3
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.2e-194 683.3 452 72.1
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.6e-194 682.9 452 72.1
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.1e-194 682.6 453 73.1
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 4.7e-194 681.4 392 80.1
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 8.1e-194 680.6 397 78.8
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 8.1e-194 680.6 401 80.0
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 4.0e-193 678.3 401 78.6
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 4.0e-193 678.3 439 75.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 5.2e-193 677.9 437 75.1
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.5e-192 676.4 394 79.9
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 2.0e-192 676.0 403 79.9
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.6e-192 675.6 385 80.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.8e-192 674.5 443 72.2
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 7.5e-192 674.1 524 64.5
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.3e-191 673.3 390 80.5
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.3e-191 673.3 439 75.2
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.2e-191 672.5 396 78.8
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 4.1e-190 668.3 326 95.1
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 3.9e-188 661.8 387 79.8
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.5e-187 659.8 442 72.2
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.3e-187 658.7 385 79.5
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.3e-187 657.5 390 78.7
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.7e-186 654.8 399 78.7
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 7.6e-184 647.5 390 76.7
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 4.9e-183 644.8 454 69.8
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 5.1e-180 634.8 454 68.1
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.1e-178 629.4 403 75.2
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.0e-176 622.9 396 76.3
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 3.4e-176 622.1 322 88.2
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.4e-176 621.7 406 71.4
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.7e-175 619.8 393 72.8
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.4e-175 617.8 346 82.4
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 2.1e-173 612.8 451 67.4
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 7.1e-166 587.8 291 92.1
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.6e-165 586.6 401 70.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.4e-161 573.5 290 90.0
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 9.0e-161 570.9 289 90.0
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 9.0e-161 570.9 378 69.8
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.4e-160 568.9 371 68.2
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.4e-150 537.0 289 82.0
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 2.1e-149 533.1 358 72.9
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.5e-143 511.1 334 67.1
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.4e-142 510.4 269 86.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.4e-142 510.4 315 79.0
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.6e-141 506.9 411 66.2
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.4e-126 457.2 381 55.9
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.0e-124 449.5 257 79.0
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.4e-121 440.7 285 69.1
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.7e-119 433.7 259 77.2
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.2e-110 402.9 342 51.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 7.0e-97 358.6 232 74.1
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.8e-95 352.8 318 52.2
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 6.4e-90 335.5 332 47.3
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 2.1e-72 277.3 139 91.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 5.8e-67 259.2 179 68.7
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.7e-56 223.8 109 92.7
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 9.0e-52 208.8 123 75.6
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.5e-51 206.5 123 74.0
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 7.9e-48 195.7 127 70.9
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.3e-47 194.1 138 62.3
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 7.6e-35 152.5 131 67.2
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.2e-34 151.0 85 82.4
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.5e-34 149.4 85 81.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 5.3e-28 129.8 101 63.4
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 5.3e-28 129.8 80 71.2
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.7e-13 81.6 52 69.2
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 2.7e-08 64.3 79 45.6
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 1.5e-06 58.5 30 76.7


User provided reference genes

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