Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p021031 Quercus lobata HOM05D001069 ORTHO05D001549 1.7e-52 209.1 110 100.0
QL03p027228 Quercus lobata HOM05D001069 ORTHO05D001549 4.3e-32 141.4 92 83.7
CiPaw.08G123000 Carya illinoinensis HOM05D001069 ORTHO05D001549 8.3e-28 127.1 86 79.1
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 2.7e-26 122.1 81 79.0
Haze_04369 Corylus avellana HOM05D001069 ORTHO05D001549 2.3e-25 119.0 81 76.5
CiPaw.07G068300 Carya illinoinensis HOM05D001069 ORTHO05D001549 1.6e-23 112.8 88 72.7
Prupe.6G344100 Prunus persica HOM05D001069 ORTHO05D001549 1.3e-20 103.2 83 69.9
Sabra13G0038500 Salix brachista HOM05D001069 ORTHO05D001549 2.9e-20 102.1 81 71.6
GSVIVG01036276001 Vitis vinifera HOM05D001069 ORTHO05D001549 6.0e-18 94.4 74 68.9
Atru.chr2.834 Acer truncatum HOM05D001069 ORTHO05D001549 1.0e-17 93.6 96 59.4
RcHm_v2.0_Chr3g0450721 Rosa chinensis HOM05D001069 ORTHO05D001549 1.3e-17 93.2 85 65.9
Thecc.05G281300 Theobroma cacao HOM05D001069 ORTHO05D001549 6.6e-17 90.9 88 60.2
Manes.09G151900 Manihot esculenta HOM05D001069 ORTHO05D001549 1.5e-16 89.7 88 59.1
FvH4_6g02710 Fragaria vesca HOM05D001069 ORTHO05D001549 1.9e-16 89.4 90 61.1
FAN14G0993 Fragaria x ananassa HOM05D001069 ORTHO05D001549 1.9e-16 89.4 90 61.1
FAN14G1169 Fragaria x ananassa HOM05D001069 ORTHO05D001549 1.9e-16 89.4 90 61.1
FAN14G4032 Fragaria x ananassa HOM05D001069 ORTHO05D001549 1.9e-16 89.4 90 61.1
MD04G1225500 Malus domestica HOM05D001069 ORTHO05D001549 1.9e-16 89.4 100 58.0
Potri.013G042000 Populus trichocarpa HOM05D001069 ORTHO05D001549 1.9e-16 89.4 86 62.8
Ciclev10028433m.g Citrus clementina HOM05D001069 ORTHO05D001549 3.3e-16 88.6 78 65.4
MD12G1242500 Malus domestica HOM05D001069 ORTHO05D001549 3.3e-16 88.6 80 63.8
FAN09G2351 Fragaria x ananassa HOM05D001069 ORTHO05D001549 9.6e-16 87.0 89 60.7
Duzib177G1087 Durio zibethinus HOM05D001069 ORTHO05D001549 2.1e-15 85.9 88 56.8
FAN14G2498 Fragaria x ananassa HOM05D001069 ORTHO05D001549 2.8e-15 85.5 91 57.1
ClCG02G016720 Citrullus lanatus HOM05D001069 ORTHO05D001549 3.6e-15 85.1 81 58.0
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 3.6e-15 85.1 86 60.5
FAN14G4752 Fragaria x ananassa HOM05D001069 ORTHO05D001549 3.6e-15 85.1 90 57.8
Potri.005G054400 Populus trichocarpa HOM05D001069 ORTHO05D001549 1.1e-14 83.6 81 63.0
CsaV3_2G004020 Cucumis sativus L. HOM05D001069 ORTHO05D001549 1.4e-14 83.2 81 58.0
FAN14G3923 Fragaria x ananassa HOM05D001069 ORTHO05D001549 1.8e-14 82.8 90 56.7
TAR362G0632 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.8e-14 82.8 78 60.3
MELO3C004389.2 Cucumis melo HOM05D001069 ORTHO05D001549 3.1e-14 82.0 81 58.0
Glyma.10G162800 Glycine max HOM05D001069 ORTHO05D001549 3.1e-14 82.0 85 55.3
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 3.1e-14 82.0 81 61.7
Gohir.D11G259800 Gossypium hirsutum HOM05D001069 ORTHO05D001549 5.2e-14 81.3 87 55.2
Gorai.007G278000 Gossypium raimondii HOM05D001069 ORTHO05D001549 5.2e-14 81.3 87 55.2
arahy.Tifrunner.gnm1.ann1.V7CRUC Arachis hypogaea HOM05D001069 ORTHO05D001549 6.9e-14 80.9 107 51.4
Ca_09425_v3 Cicer arietinum L. HOM05D001069 ORTHO05D001549 9.0e-14 80.5 85 50.6
Dinv22471 Davidia involucrata HOM05D001069 ORTHO05D001549 9.0e-14 80.5 95 53.7
FAN14G1121 Fragaria x ananassa HOM05D000092 ORTHO05D000042 9.0e-14 80.5 86 54.7
arahy.Tifrunner.gnm1.ann1.8YHQ6Y Arachis hypogaea HOM05D001069 ORTHO05D001549 1.2e-13 80.1 105 51.4
Gohir.A11G249000 Gossypium hirsutum HOM05D001069 ORTHO05D001549 1.2e-13 80.1 87 55.2
FvH4_6g02790 Fragaria vesca HOM05D001069 ORTHO05D001549 2.0e-13 79.3 101 52.5
Lalb_Chr02g0148861 Lupinus albus HOM05D001069 ORTHO05D001549 2.6e-13 79.0 85 52.9
Dinv08151 Davidia involucrata HOM05D001069 ORTHO05D001549 3.4e-13 78.6 110 48.2
Dinv20293 Davidia involucrata HOM05D001069 ORTHO05D001549 4.4e-13 78.2 110 47.3
VMungo0720G0290 Vigna mungo HOM05D001069 ORTHO05D001549 7.6e-13 77.4 85 54.1
arahy.Tifrunner.gnm1.ann1.UE6XF8 Arachis hypogaea HOM05D001069 ORTHO05D001549 9.9e-13 77.0 81 55.6
Phvul.007G187800 Phaseolus vulgaris HOM05D001069 ORTHO05D001549 9.9e-13 77.0 105 44.8
TPR.G7010 Trifolium pratense HOM05D001069 ORTHO05D001549 9.9e-13 77.0 87 49.4
arahy.Tifrunner.gnm1.ann1.W2FENU Arachis hypogaea HOM05D001069 ORTHO05D001549 1.3e-12 76.6 75 56.0
FAN05G0336 Fragaria x ananassa HOM05D001069 ORTHO05D001549 1.3e-12 76.6 90 57.8
Psat0s118g0080 Pisum sativum HOM05D001069 ORTHO05D001549 1.3e-12 76.6 84 51.2
Manes.08G135600 Manihot esculenta HOM05D001069 ORTHO05D001549 1.7e-12 76.3 72 59.7
Medtr7g115240 Medicago truncatula HOM05D001069 ORTHO05D001549 1.7e-12 76.3 88 50.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.7e-12 76.3 97 53.6
PSO210G3432 Papaver somniferum HOM05D001069 ORTHO05D001549 2.9e-12 75.5 106 50.0
PSO832G1771 Papaver somniferum HOM05D001069 ORTHO05D001549 2.9e-12 75.5 106 50.0
CANSAT54G2615 Cannabis sativa HOM05D001069 ORTHO05D001549 4.9e-12 74.7 90 51.1
Lalb_Chr21g0311001 Lupinus albus HOM05D001069 ORTHO05D001549 6.4e-12 74.3 105 45.7
Glyma.20G225400 Glycine max HOM05D001069 ORTHO05D001549 8.4e-12 73.9 105 44.8
TWI12G1297 Tripterygium wilfordii HOM05D001069 ORTHO05D001549 1.1e-11 73.6 68 64.7
Sed0019819 Sechium edule HOM05D001069 ORTHO05D001549 1.9e-11 72.8 70 55.7
Hma1.2p1_0817F.1_g223140 Hydrangea macrophylla HOM05D001069 ORTHO05D001549 2.4e-11 72.4 110 43.6
Nn3g19513 Nelumbo nucifera HOM05D001069 ORTHO05D001549 2.4e-11 72.4 80 55.0
Sopen09g027760 Solanum pennellii HOM05D001069 ORTHO05D001549 4.2e-11 71.6 84 51.2
Lj1g0000165 Lotus japonicus HOM05D001069 ORTHO05D001549 5.4e-11 71.2 91 50.5
Peaxi162Scf01311g00124 Petunia axillaris HOM05D001069 ORTHO05D001549 5.4e-11 71.2 86 50.0
PGSC0003DMG400015075 Solanum tuberosum HOM05D001069 ORTHO05D001549 5.4e-11 71.2 84 51.2
Lj5g0021522 Lotus japonicus HOM05D001069 ORTHO05D001549 7.1e-11 70.9 85 49.4
GSVIVG01000748001 Vitis vinifera HOM05D001069 ORTHO05D001549 7.1e-11 70.9 84 52.4
Actinidia32807 Actinidia chinensis HOM05D001069 ORTHO05D001549 9.3e-11 70.5 78 56.4
MSTRG.21509 Avicennia marina HOM05D001069 ORTHO05D001549 9.3e-11 70.5 76 56.6
CSS0005585 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 9.3e-11 70.5 95 46.3
FvH4_6g02760 Fragaria vesca HOM05D000092 ORTHO05D000042 9.3e-11 70.5 101 49.5
Solyc09g065990.3 Solanum lycopersicum HOM05D001069 ORTHO05D001549 9.3e-11 70.5 84 50.0
Peaxi162Scf01099g00031 Petunia axillaris HOM05D001069 ORTHO05D001549 1.6e-10 69.7 93 46.2
TAR365G0140 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.6e-10 69.7 76 60.5
Lj2A1158G44 Lonicera japonica HOM05D001069 ORTHO05D001549 2.1e-10 69.3 97 47.4
Eucgr.B02121 Eucalyptus grandis HOM05D001069 ORTHO05D001549 4.6e-10 68.2 84 47.6
CSS0007284 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 6.0e-10 67.8 95 50.5
Cc01_g18760 Coffea canephora HOM05D001069 ORTHO05D001549 7.8e-10 67.4 95 46.3
Hma1.2p1_1029F.1_g249660 Hydrangea macrophylla HOM05D001069 ORTHO05D001549 1.0e-09 67.0 109 44.0
PGR142G3379 Punica granatum HOM05D001069 ORTHO05D001549 1.0e-09 67.0 59 61.0
Nitab4.5_0002680g0050 Nicotiana tabacum HOM05D001069 ORTHO05D001549 1.3e-09 66.6 100 44.0
Sopen06g035430 Solanum pennellii HOM05D001069 ORTHO05D001549 1.3e-09 66.6 84 47.6
TAR633G1901 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.3e-09 66.6 70 57.1
Actinidia24945 Actinidia chinensis HOM05D001069 ORTHO05D001549 1.7e-09 66.2 97 48.5
AUR62000996 Chenopodium quinoa HOM05D001069 ORTHO05D001549 3.0e-09 65.5 91 49.5
AUR62004964 Chenopodium quinoa HOM05D001069 ORTHO05D001549 3.0e-09 65.5 91 49.5
Nitab4.5_0000187g0270 Nicotiana tabacum HOM05D001069 ORTHO05D001549 3.0e-09 65.5 84 47.6
CSS0046589 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 3.9e-09 65.1 80 53.8
Solyc06g084040.3 Solanum lycopersicum HOM05D001069 ORTHO05D001549 3.9e-09 65.1 98 43.9
Nitab4.5_0006433g0020 Nicotiana tabacum HOM05D001069 ORTHO05D001549 5.1e-09 64.7 94 45.7
Hund22102 Selenicereus undatus HOM05D001069 ORTHO05D001549 5.1e-09 64.7 91 50.5
PGSC0003DMG400020061 Solanum tuberosum HOM05D001069 ORTHO05D001549 5.1e-09 64.7 98 42.9
Cfa002337 Carpinus fangiana HOM05D001069 ORTHO05D001549 8.7e-09 63.9 93 46.2
Haze_24541 Corylus avellana HOM05D001069 ORTHO05D001549 8.7e-09 63.9 93 46.2
Duzib133G0593 Durio zibethinus HOM05D001069 ORTHO05D001549 8.7e-09 63.9 77 54.5
Sc06g0003690 Simmondsia chinensis HOM05D001069 ORTHO05D001549 8.7e-09 63.9 93 44.1
Manes.05G085200 Manihot esculenta HOM05D001069 ORTHO05D001549 1.1e-08 63.5 97 48.5
Peaxi162Scf01311g00022 Petunia axillaris HOM05D001069 ORTHO05D001549 1.1e-08 63.5 84 46.4
Rhsim07G0075000 Rhododendron simsii HOM05D001069 ORTHO05D001549 1.5e-08 63.2 72 51.4
Nn1g02582 Nelumbo nucifera HOM05D001069 ORTHO05D001549 1.9e-08 62.8 90 46.7
PGSC0003DMG400005328 Solanum tuberosum HOM05D001069 ORTHO05D001549 1.9e-08 62.8 69 50.7
SalBow6G1387 Salvia bowleyana HOM05D001069 ORTHO05D001549 2.5e-08 62.4 80 50.0
Nitab4.5_0001044g0100 Nicotiana tabacum HOM05D001069 ORTHO05D001549 3.3e-08 62.0 94 44.7
Psat3g060040 Pisum sativum HOM05D001069 ORTHO05D001549 3.3e-08 62.0 105 43.8
Solyc06g008600.3 Solanum lycopersicum HOM05D001069 ORTHO05D001549 3.3e-08 62.0 83 47.0
SGA_v2.0_scaffold81G26062 Striga asiatica HOM05D001069 ORTHO05D001549 3.3e-08 62.0 71 52.1
DCAR_018455 Daucus carota HOM05D001069 ORTHO05D001549 4.3e-08 61.6 70 54.3
Manes.01G201200 Manihot esculenta HOM05D001069 ORTHO05D001549 4.3e-08 61.6 84 50.0
PSO017G4229 Papaver somniferum HOM05D001069 ORTHO05D001549 4.3e-08 61.6 91 47.3
EL10Ac4g09162 Beta vulgaris HOM05D001069 ORTHO05D001549 5.6e-08 61.2 90 47.8
Duzib211G0695 Durio zibethinus HOM05D001069 ORTHO05D001549 5.6e-08 61.2 77 53.2
Thecc.01G266500 Theobroma cacao HOM05D001069 ORTHO05D001549 5.6e-08 61.2 77 51.9
Actinidia21162 Actinidia chinensis HOM05D001069 ORTHO05D001549 7.3e-08 60.8 86 46.5
Duzib138G1563 Durio zibethinus HOM05D001069 ORTHO05D001549 7.3e-08 60.8 77 54.5
Migut.D00380 Erythranthe guttata HOM05D001069 ORTHO05D001549 9.6e-08 60.5 98 44.9
Sed0014777 Sechium edule HOM05D001069 ORTHO05D001549 9.6e-08 60.5 78 46.2
Sc20g0000400 Simmondsia chinensis HOM05D001069 ORTHO05D001549 1.3e-07 60.1 74 44.6
Peaxi162Scf01311g00123 Petunia axillaris HOM05D001069 ORTHO05D001549 2.1e-07 59.3 93 40.9
Nitab4.5_0007553g0020 Nicotiana tabacum HOM05D001069 ORTHO05D001549 2.8e-07 58.9 84 42.9
vmacro14865 Vaccinium macrocarpon HOM05D001069 ORTHO05D001549 2.8e-07 58.9 96 43.8
Dinv44621 Davidia involucrata HOM05D001069 ORTHO05D001549 4.8e-07 58.2 81 44.4
Oeu010129.1 Olea europaea HOM05D001069 ORTHO05D001549 4.8e-07 58.2 75 46.7
PSO170G5329 Papaver somniferum HOM05D001069 ORTHO05D001549 4.8e-07 58.2 76 51.3
MD05G1204700 Malus domestica HOM05D001069 ORTHO05D001549 6.2e-07 57.8 71 53.5
MD10G1191800 Malus domestica HOM05D001069 ORTHO05D001549 6.2e-07 57.8 71 54.9
Os03g0632800 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D001549 6.2e-07 57.8 79 49.4
vmacro13825 Vaccinium macrocarpon HOM05D001069 ORTHO05D001549 6.2e-07 57.8 94 42.6
Ah.06g192500 Amaranthus hybridus HOM05D001069 ORTHO05D001549 8.1e-07 57.4 103 42.7
CAN.G280.12 Capsicum annuum HOM05D001069 ORTHO05D001549 8.1e-07 57.4 76 46.1
Gohir.A11G127820 Gossypium hirsutum HOM05D001069 ORTHO05D001549 8.1e-07 57.4 80 48.8
Gohir.D11G133300 Gossypium hirsutum HOM05D001069 ORTHO05D001549 1.1e-06 57.0 80 48.8
Gorai.007G142500 Gossypium raimondii HOM05D001069 ORTHO05D001549 1.1e-06 57.0 80 48.8
SGA_v2.0_scaffold1G00566 Striga asiatica HOM05D001069 ORTHO05D001549 1.1e-06 57.0 84 51.2
Zm00001eb051090 Zea mays HOM05D001069 ORTHO05D001549 1.1e-06 57.0 71 47.9
DCAR_007344 Daucus carota HOM05D001069 ORTHO05D001549 1.4e-06 56.6 100 39.0
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 1.4e-06 56.6 95 43.2
QL06p015285 Quercus lobata HOM05D001069 ORTHO05D001549 1.4e-06 56.6 79 44.3
DCAR_012519 Daucus carota HOM05D001069 ORTHO05D001549 1.8e-06 56.2 80 47.5
RcHm_v2.0_Chr6g0289351 Rosa chinensis HOM05D001069 ORTHO05D001549 1.8e-06 56.2 89 43.8
COL.COLO4_05097 Corchorus olitorius HOM05D001069 ORTHO05D001549 2.4e-06 55.8 94 43.6
CiPaw.04G182600 Carya illinoinensis HOM05D001069 ORTHO05D001549 3.1e-06 55.5 93 44.1
QL12p042817 Quercus lobata HOM05D001069 ORTHO05D001549 3.1e-06 55.5 81 48.1
GSVIVG01018105001 Vitis vinifera HOM05D001069 ORTHO05D001549 3.1e-06 55.5 90 40.0
Oeu025797.2 Olea europaea HOM05D001069 ORTHO05D001549 4.0e-06 55.1 82 45.1
TWI12G1130 Tripterygium wilfordii HOM05D001069 ORTHO05D001549 4.0e-06 55.1 60 51.7
Oeu058806.1 Olea europaea HOM05D001069 ORTHO05D001549 5.3e-06 54.7 84 44.0
MSTRG.18293 Avicennia marina HOM05D001069 ORTHO05D001549 6.9e-06 54.3 95 38.9
Ca_08650_v3 Cicer arietinum L. HOM05D001069 ORTHO05D001549 6.9e-06 54.3 105 41.0
Medtr7g096210 Medicago truncatula HOM05D001069 ORTHO05D001549 6.9e-06 54.3 80 43.8
Sopen06g003370 Solanum pennellii HOM05D001069 ORTHO05D001549 6.9e-06 54.3 83 44.6
SGA_v2.0_scaffold80G25912 Striga asiatica HOM05D001069 ORTHO05D001549 6.9e-06 54.3 85 43.5


User provided reference genes

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