Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 7.2e-170 600.5 308 100.0
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 4.1e-80 302.4 388 52.6
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 8.2e-73 278.1 317 54.9
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.4e-72 277.3 317 53.3
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 4.2e-69 265.8 315 52.4
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 9.4e-69 264.6 315 53.0
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 2.1e-68 263.5 315 52.7
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.1e-68 263.5 317 53.0
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 2.7e-68 263.1 313 52.4
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 4.7e-68 262.3 315 50.8
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.0e-67 261.2 315 50.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 1.0e-67 261.2 315 50.2
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.4e-67 260.8 315 51.4
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 5.1e-67 258.8 315 52.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 5.1e-67 258.8 315 50.8
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.1e-66 257.7 315 49.8
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 2.0e-66 256.9 309 50.2
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 2.0e-66 256.9 316 51.9
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 1.7e-65 253.8 313 50.5
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 4.1e-64 249.2 315 48.3
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 2.0e-63 246.9 301 50.5
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 5.9e-63 245.4 309 48.9
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 5.9e-63 245.4 315 48.6
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 7.7e-63 245.0 315 48.3
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 2.2e-62 243.4 317 49.2
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 2.9e-62 243.0 315 47.0
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 5.0e-62 242.3 315 47.3
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 8.5e-62 241.5 315 48.6
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.4e-61 240.7 314 47.1
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 3.2e-61 239.6 315 46.3
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 7.2e-61 238.4 328 45.4
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 7.2e-61 238.4 311 47.3
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 7.2e-61 238.4 305 47.2
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 9.4e-61 238.0 315 47.0
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 9.4e-61 238.0 317 47.3
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 1.2e-60 237.7 315 50.5
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 4.7e-60 235.7 315 46.7
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 4.7e-60 235.7 305 48.5
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 6.1e-60 235.3 315 46.0
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 8.0e-60 235.0 305 47.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 8.0e-60 235.0 313 47.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.8e-59 233.8 309 45.3
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.3e-59 233.4 265 50.9
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 2.3e-59 233.4 315 46.3
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 5.2e-59 232.3 230 55.2
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 6.7e-59 231.9 266 51.1
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.5e-58 230.7 315 45.7
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 2.0e-58 230.3 315 45.4
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.0e-58 230.3 315 45.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 2.6e-58 229.9 316 46.5
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 3.3e-58 229.6 315 45.4
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.3e-57 227.6 309 46.0
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.7e-57 227.3 312 46.5
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.8e-57 226.5 269 49.8
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.8e-57 226.5 312 46.2
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 2.8e-57 226.5 315 45.1
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 3.7e-57 226.1 305 47.2
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 4.8e-57 225.7 315 45.7
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 6.3e-57 225.3 315 44.8
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 1.1e-56 224.6 316 46.8
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.1e-56 224.6 308 45.1
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.4e-56 224.2 308 45.1
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.3e-56 222.2 278 49.3
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 5.3e-56 222.2 315 45.7
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 5.3e-56 222.2 315 43.5
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 9.1e-56 221.5 310 45.2
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 9.1e-56 221.5 315 44.1
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 7.7e-55 218.4 317 43.8
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.7e-54 217.2 313 43.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 5.0e-54 215.7 264 51.9
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.5e-53 212.2 313 43.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.2e-52 211.1 313 42.5
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.8e-51 207.2 311 42.8
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 8.8e-51 204.9 320 41.6
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 2.0e-50 203.8 362 39.0
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 4.8e-49 199.1 313 41.2
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 6.3e-49 198.7 315 40.3
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 8.3e-49 198.4 246 49.2
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.8e-48 197.2 319 41.1
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 3.1e-48 196.4 137 69.3
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.0e-47 193.7 300 41.7
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.7e-47 193.4 319 39.8
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.5e-47 193.0 316 39.9
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 5.9e-47 192.2 264 43.2
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.7e-46 190.7 319 39.5
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 2.2e-46 190.3 319 39.5
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 6.5e-46 188.7 320 39.7
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.1e-45 188.0 320 39.7
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.2e-45 186.0 228 48.2
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 5.5e-45 185.7 307 39.7
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 9.4e-45 184.9 233 48.1
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 4.0e-43 179.5 264 42.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 3.4e-42 176.4 284 40.1
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.8e-41 172.6 224 46.4
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.3e-41 172.2 227 44.1
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.4e-40 170.2 211 51.2
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.5e-37 159.1 186 48.9
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 4.9e-33 146.0 317 34.4
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 6.3e-33 145.6 154 51.9
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 6.6e-30 135.6 262 34.4
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.6e-30 135.2 144 52.8
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.1e-29 134.8 192 44.3
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 5.0e-22 109.4 130 50.8
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.8e-19 100.9 124 49.2
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.8e-19 100.9 124 49.2
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.3e-19 100.5 167 38.9
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 4.9e-17 92.8 257 28.4
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 4.1e-16 89.7 231 32.0
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 7.0e-16 89.0 147 40.1
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 7.0e-16 89.0 147 40.1
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.1e-13 81.6 112 44.6
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.2e-12 75.9 121 41.3
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 2.0e-10 70.9 55 63.6
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 1.7e-09 67.8 199 31.2
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.7e-09 67.8 72 51.4
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.9e-09 67.0 119 39.5
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 8.3e-09 65.5 91 45.1
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-08 65.1 116 37.9
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 6.0e-07 59.3 82 45.1
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.0e-06 58.5 86 44.2


User provided reference genes

Program Settings