Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 0.0e+00 1539.2 756 100.0
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 7.0e-166 588.6 723 51.7
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 4.9e-95 353.2 521 44.7
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 5.2e-36 157.1 212 44.3
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 6.8e-36 156.8 182 48.4
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 1.5e-35 155.6 209 45.5
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 2.0e-35 155.2 182 48.4
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 4.4e-35 154.1 191 46.6
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 5.7e-35 153.7 185 48.6
QL09p047340 Quercus lobata HOM05D005905 ORTHO05D005996 2.8e-34 151.4 164 53.7
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 4.8e-34 150.6 195 44.1
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 6.3e-34 150.2 187 48.1
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 6.3e-34 150.2 197 45.2
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 8.3e-34 149.8 193 44.6
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 5.4e-33 147.1 195 45.6
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 7.0e-33 146.7 211 43.1
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 9.1e-33 146.4 195 43.6
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 9.1e-33 146.4 197 44.7
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 2.0e-32 145.2 197 43.1
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 5.9e-32 143.7 197 43.7
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 7.7e-32 143.3 195 44.1
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 1.0e-31 142.9 195 42.1
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 1.0e-31 142.9 198 43.9
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.7e-31 142.1 195 44.1
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 5.0e-31 140.6 196 43.9
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 1.1e-30 139.4 196 44.9
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 1.5e-30 139.0 201 43.3
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 1.9e-30 138.7 195 43.6
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 1.9e-30 138.7 197 42.6
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 2.5e-30 138.3 195 42.6
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 3.2e-30 137.9 197 42.6
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 5.5e-30 137.1 197 42.1
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 7.2e-30 136.7 209 40.7
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 7.2e-30 136.7 195 44.1
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 7.2e-30 136.7 193 42.5
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 9.5e-30 136.3 196 43.4
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 1.6e-29 135.6 195 42.1
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 1.6e-29 135.6 195 43.6
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 2.7e-29 134.8 195 43.6
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 3.6e-29 134.4 195 43.1
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 3.6e-29 134.4 193 43.0
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 3.6e-29 134.4 199 42.2
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 3.6e-29 134.4 187 43.3
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 4.7e-29 134.0 180 42.2
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 6.1e-29 133.7 209 40.2
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 6.1e-29 133.7 209 40.2
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 1.8e-28 132.1 189 41.8
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 1.8e-28 132.1 189 42.3
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 2.3e-28 131.7 197 41.6
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 3.0e-28 131.3 194 41.2
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 3.0e-28 131.3 187 42.2
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 5.2e-28 130.6 209 39.2
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 5.2e-28 130.6 209 39.2
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 5.2e-28 130.6 216 38.4
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 5.2e-28 130.6 211 38.4
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 6.8e-28 130.2 197 41.1
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 6.8e-28 130.2 192 41.7
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 8.8e-28 129.8 210 39.5
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 1.2e-27 129.4 197 40.1
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 1.5e-27 129.0 180 42.8
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 2.0e-27 128.6 197 40.1
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.0e-27 128.6 197 39.6
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 2.6e-27 128.3 209 39.7
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 2.6e-27 128.3 209 39.7
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 3.4e-27 127.9 197 42.1
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 4.4e-27 127.5 196 42.3
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 5.7e-27 127.1 195 43.1
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 5.7e-27 127.1 198 39.9
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 5.7e-27 127.1 184 39.7
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 9.8e-27 126.3 233 36.9
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 9.8e-27 126.3 222 37.4
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 9.8e-27 126.3 196 40.8
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 1.3e-26 125.9 211 39.3
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 1.7e-26 125.6 209 39.2
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 1.7e-26 125.6 183 39.9
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 1.7e-26 125.6 187 40.6
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 1.7e-26 125.6 197 40.6
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 2.2e-26 125.2 210 38.1
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 2.8e-26 124.8 197 38.6
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.8e-26 124.8 194 39.7
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.8e-26 124.8 194 39.7
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 2.8e-26 124.8 198 39.4
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 6.3e-26 123.6 197 40.6
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 1.4e-25 122.5 196 39.3
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 1.4e-25 122.5 229 35.4
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 1.4e-25 122.5 195 40.5
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 1.4e-25 122.5 197 40.1
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 2.4e-25 121.7 143 47.6
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 2.4e-25 121.7 194 39.2
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 7.0e-25 120.2 192 40.1
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 9.2e-25 119.8 196 40.8
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 1.2e-24 119.4 201 39.3
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 1.2e-24 119.4 188 39.4
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 1.2e-24 119.4 175 41.7
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 2.0e-24 118.6 201 37.8
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 1.3e-23 115.9 142 42.3
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 2.3e-23 115.2 178 39.9
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 3.8e-23 114.4 233 34.8
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 8.6e-23 113.2 122 51.6
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 8.6e-23 113.2 159 42.1
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 8.6e-23 113.2 159 42.1
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 2.5e-22 111.7 172 39.5
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 2.8e-21 108.2 180 38.9
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 3.6e-21 107.8 170 38.8
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.0e-20 106.3 175 39.4
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 1.8e-20 105.5 178 38.8
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 8.9e-20 103.2 176 38.6
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.2e-19 102.8 202 36.1
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 2.6e-19 101.7 102 52.0
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 4.4e-19 100.9 161 39.1
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 9.8e-19 99.8 180 36.7
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 9.8e-19 99.8 160 33.8
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 3.7e-18 97.8 199 35.7
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 2.4e-17 95.1 116 46.6
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 5.4e-17 94.0 201 33.8
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 9.2e-17 93.2 180 35.6
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 5.9e-16 90.5 110 45.5
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 7.8e-16 90.1 140 40.0
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 1.3e-15 89.4 139 41.7
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.6e-14 84.0 157 38.2
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 1.2e-13 82.8 100 42.0
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 8.0e-13 80.1 165 34.5
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 4.0e-12 77.8 119 39.5
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.2e-12 77.4 206 34.0
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.4e-11 74.7 138 34.1
Lj6C513G1 Lonicera japonica HOM05D000003 ORTHO05D000006 1.1e-09 69.7 115 39.1
QL07p019949 Quercus lobata HOM05D000003 ORTHO05D000006 4.1e-09 67.8 140 27.1
Atru.chr7.1973 Acer truncatum HOM05D000003 ORTHO05D000006 7.0e-09 67.0 136 30.9
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 7.0e-09 67.0 145 30.3
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 9.2e-09 66.6 171 29.2
TWI38G0206 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 1.2e-08 66.2 141 29.8
QL01p029685 Quercus lobata HOM05D000003 ORTHO05D000126 2.0e-08 65.5 163 29.4
QL01p035015 Quercus lobata HOM05D000003 ORTHO05D000006 3.5e-08 64.7 141 30.5
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 3.5e-08 64.7 144 29.2
CiPaw.01G042200 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.6e-08 64.3 144 27.8
QL04p086524 Quercus lobata HOM05D000003 ORTHO05D000006 6.0e-08 63.9 175 24.6
Atru.chr6.65 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-08 63.5 142 28.2
QL05p073923 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-07 63.2 144 26.4
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-07 62.8 145 29.0
QL93p0151_0017 Quercus lobata HOM05D000003 ORTHO05D000006 1.7e-07 62.4 142 28.9
Atru.chr10.299 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-07 62.0 145 28.3
Atru.chr2.1764 Acer truncatum HOM05D000003 ORTHO05D000006 2.3e-07 62.0 145 30.3
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-07 61.2 142 28.9
FvH4_2g28261 Fragaria vesca HOM05D000003 ORTHO05D000006 3.9e-07 61.2 145 29.7
CANSAT01G2836 Cannabis sativa HOM05D000003 ORTHO05D000126 5.0e-07 60.8 144 27.1
QL12p024011 Quercus lobata HOM05D000003 ORTHO05D000004 5.0e-07 60.8 50 48.0
Sed0000842 Sechium edule HOM05D000003 ORTHO05D000126 5.0e-07 60.8 133 28.6
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-07 60.5 145 28.3
Atru.chr6.1670 Acer truncatum HOM05D000003 ORTHO05D000006 8.6e-07 60.1 143 28.7
Atru.ctg24.7 Acer truncatum HOM05D000003 ORTHO05D000006 8.6e-07 60.1 143 30.1
CANSAT56G0110 Cannabis sativa HOM05D000003 ORTHO05D000006 8.6e-07 60.1 149 28.9
TWI80G0001 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 8.6e-07 60.1 143 31.5
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 59.7 143 28.7
AUR62034310 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.1e-06 59.7 142 28.9
QL05p024765 Quercus lobata HOM05D000003 ORTHO05D000006 1.1e-06 59.7 147 27.9
QL09p045506 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-06 59.3 144 24.3
Atru.chr4.2368 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 58.9 142 30.3
QL06p020564 Quercus lobata HOM05D000003 ORTHO05D000006 1.9e-06 58.9 146 27.4
Atru.chr13.2083 Acer truncatum HOM05D000003 ORTHO05D000006 3.3e-06 58.2 140 28.6
Atru.chr9.814 Acer truncatum HOM05D000003 ORTHO05D000006 4.3e-06 57.8 143 25.9
Cre06.g287176 Chlamydomonas reinhardtii HOM05D005905 ORTHO05D005996 4.3e-06 57.8 83 41.0
RcHm_v2.0_Chr7g0203221 Rosa chinensis HOM05D005281 ORTHO05D006351 4.3e-06 57.8 149 27.5
Atru.chr1.764 Acer truncatum HOM05D000003 ORTHO05D000006 5.6e-06 57.4 145 27.6
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-06 57.4 145 25.5
CANSAT56G2039 Cannabis sativa HOM05D000003 ORTHO05D000004 7.3e-06 57.0 144 26.4
CANSAT78G0953 Cannabis sativa HOM05D000003 ORTHO05D000006 7.3e-06 57.0 214 22.9
AUR62025365 Chenopodium quinoa HOM05D000003 ORTHO05D000006 7.3e-06 57.0 142 27.5
Atru.chr9.913 Acer truncatum HOM05D000003 ORTHO05D000004 9.5e-06 56.6 120 29.2
CANSAT25G3037 Cannabis sativa HOM05D000003 ORTHO05D000006 9.5e-06 56.6 138 26.8
CiPaw.16G000200 Carya illinoinensis HOM05D000003 ORTHO05D000006 9.5e-06 56.6 135 30.4
FAN18G1830 Fragaria x ananassa HOM05D005281 ORTHO05D006351 9.5e-06 56.6 160 26.9
QL07p025043 Quercus lobata HOM05D000003 ORTHO05D000006 9.5e-06 56.6 127 28.3
Sopen02g039300 Solanum pennellii HOM05D000003 ORTHO05D000004 9.5e-06 56.6 57 38.6


User provided reference genes

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