Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p015762 Quercus lobata HOM05D008135 ORTHO05D010260 3.4e-46 188.0 94 100.0
QL05p015735 Quercus lobata HOM05D008135 ORTHO05D010260 1.4e-28 129.4 99 72.7
QL05p015599 Quercus lobata HOM05D008135 ORTHO05D010260 3.7e-24 114.8 67 89.6
Cfa003610 Carpinus fangiana HOM05D008135 ORTHO05D010260 4.2e-20 101.3 68 76.5
CiPaw.01G227600 Carya illinoinensis HOM05D008135 ORTHO05D010260 3.5e-19 98.2 69 73.9
RcHm_v2.0_Chr2g0142321 Rosa chinensis HOM05D008135 ORTHO05D010260 3.9e-18 94.7 70 74.3
Manes.11G029100 Manihot esculenta HOM05D008135 ORTHO05D010260 2.2e-16 89.0 74 63.5
Prupe.3G053100 Prunus persica HOM05D008135 ORTHO05D010260 3.7e-16 88.2 66 71.2
FAN05G3342 Fragaria x ananassa HOM05D008135 ORTHO05D010260 1.8e-15 85.9 68 69.1
FvH4_6g32890 Fragaria vesca HOM05D008135 ORTHO05D010260 6.9e-15 84.0 70 65.7
Sabra01G0135100 Salix brachista HOM05D008135 ORTHO05D010260 9.0e-15 83.6 72 59.7
FAN02G1144 Fragaria x ananassa HOM05D008135 ORTHO05D010260 1.2e-14 83.2 70 65.7
Glyma.08G196600 Glycine max HOM05D008135 ORTHO05D010260 1.5e-14 82.8 72 62.5
Phvul.010G142400 Phaseolus vulgaris HOM05D008135 ORTHO05D010260 1.5e-14 82.8 72 61.1
Glyma.07G012900 Glycine max HOM05D008135 ORTHO05D010260 2.0e-14 82.4 72 62.5
Potri.001G194100 Populus trichocarpa HOM05D008135 ORTHO05D010260 4.5e-14 81.3 69 59.4
arahy.Tifrunner.gnm1.ann1.4P5WGY Arachis hypogaea HOM05D008135 ORTHO05D010260 7.7e-14 80.5 73 67.1
Medtr8g015560 Medicago truncatula HOM05D008135 ORTHO05D010260 1.3e-13 79.7 73 63.0
Duzib235G1506 Durio zibethinus HOM05D008135 ORTHO05D010260 2.9e-13 78.6 73 57.5
Nitab4.5_0006071g0080 Nicotiana tabacum HOM05D008135 ORTHO05D010260 3.8e-13 78.2 86 45.3
arahy.Tifrunner.gnm1.ann1.7STU2J Arachis hypogaea HOM05D008135 ORTHO05D010260 5.0e-13 77.8 73 65.8
Psat4g194640 Pisum sativum HOM05D008135 ORTHO05D010260 5.0e-13 77.8 73 63.0
Lj3g0018742 Lotus japonicus HOM05D008135 ORTHO05D010260 6.5e-13 77.4 65 69.2
Cpa.g.sc131.24 Carica papaya HOM05D008135 ORTHO05D010260 1.9e-12 75.9 74 59.5
COL.COLO4_30598 Corchorus olitorius HOM05D008135 ORTHO05D010260 1.9e-12 75.9 77 54.5
Gohir.D05G135300 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.9e-12 75.9 70 58.6
Manes.04G137100 Manihot esculenta HOM05D008135 ORTHO05D010260 1.9e-12 75.9 73 63.0
Thecc.06G106900 Theobroma cacao HOM05D008135 ORTHO05D010260 2.5e-12 75.5 69 53.6
Gohir.A05G133400 Gossypium hirsutum HOM05D008135 ORTHO05D010260 4.2e-12 74.7 70 58.6
Gorai.009G139100 Gossypium raimondii HOM05D008135 ORTHO05D010260 4.2e-12 74.7 70 58.6
Lalb_Chr25g0280561 Lupinus albus HOM05D008135 ORTHO05D010260 4.2e-12 74.7 72 56.9
Actinidia21739 Actinidia chinensis HOM05D008135 ORTHO05D010260 5.5e-12 74.3 71 57.7
CSS0040576 Camellia sinensis var. sinensis HOM05D008135 ORTHO05D010260 5.5e-12 74.3 68 60.3
Dinv30405 Davidia involucrata HOM05D008135 ORTHO05D010260 5.5e-12 74.3 77 53.2
Gohir.A10G062350 Gossypium hirsutum HOM05D008135 ORTHO05D010260 5.5e-12 74.3 73 57.5
Rhsim08G0230800 Rhododendron simsii HOM05D008135 ORTHO05D010260 5.5e-12 74.3 51 70.6
ECA232G1244 Erigeron canadensis HOM05D008135 ORTHO05D010260 7.2e-12 73.9 49 71.4
Solyc03g121340.1 Solanum lycopersicum HOM05D008135 ORTHO05D010260 9.4e-12 73.6 60 58.3
Actinidia32128 Actinidia chinensis HOM05D008135 ORTHO05D010260 1.2e-11 73.2 66 60.6
Gorai.011G068000 Gossypium raimondii HOM05D008135 ORTHO05D010260 1.2e-11 73.2 73 56.2
vmacro18825 Vaccinium macrocarpon HOM05D008135 ORTHO05D010260 1.2e-11 73.2 54 64.8
DCAR_007606 Daucus carota HOM05D008135 ORTHO05D010260 1.6e-11 72.8 59 61.0
TAR624G1313 Trochodendron aralioides HOM05D008135 ORTHO05D010260 1.6e-11 72.8 53 60.4
CsaV3_7G034940 Cucumis sativus L. HOM05D008135 ORTHO05D010260 2.1e-11 72.4 74 55.4
Gohir.D10G064050 Gossypium hirsutum HOM05D008135 ORTHO05D010260 3.6e-11 71.6 73 54.8
MELO3C024405.2 Cucumis melo HOM05D008135 ORTHO05D010260 4.6e-11 71.2 74 55.4
Nitab4.5_0004848g0120 Nicotiana tabacum HOM05D008135 ORTHO05D010260 4.6e-11 71.2 52 63.5
Peaxi162Scf00038g01219 Petunia axillaris HOM05D008135 ORTHO05D010260 4.6e-11 71.2 51 66.7
Sopen03g040150 Solanum pennellii HOM05D008135 ORTHO05D010260 1.4e-10 69.7 55 60.0
ClCG09G000520 Citrullus lanatus HOM05D008135 ORTHO05D010260 1.8e-10 69.3 74 52.7
THA.LOC109116552 Tarenaya hassleriana HOM05D008135 ORTHO05D010260 1.8e-10 69.3 54 61.1
TAR383G0415 Trochodendron aralioides HOM05D008135 ORTHO05D010260 1.8e-10 69.3 69 55.1
DCAR_026371 Daucus carota HOM05D008135 ORTHO05D010260 3.0e-10 68.6 53 62.3
Oeu052813.1 Olea europaea HOM05D008135 ORTHO05D010260 8.8e-10 67.0 63 55.6
Sed0004354 Sechium edule HOM05D008135 ORTHO05D010260 1.5e-09 66.2 76 53.9
unitig_88.g27599 Utricularia gibba HOM05D008135 ORTHO05D010260 2.0e-09 65.9 54 61.1
Eucgr.J02889 Eucalyptus grandis HOM05D008135 ORTHO05D010260 2.5e-09 65.5 59 57.6
Atru.chr1.3625 Acer truncatum HOM05D008135 ORTHO05D010260 9.7e-09 63.5 75 49.3
MSTRG.11003 Avicennia marina HOM05D008135 ORTHO05D010260 9.7e-09 63.5 51 62.7
Migut.I00998 Erythranthe guttata HOM05D008135 ORTHO05D010260 2.8e-08 62.0 44 65.9
Os01g0558700 Oryza sativa ssp. japonica HOM05D008135 ORTHO05D010260 3.1e-07 58.5 81 42.0
C03p51630 Brassica napus HOM05D011376 ORTHO05D013452 4.1e-07 58.2 74 51.4
BcaC01g03511 Brassica carinata HOM05D011376 ORTHO05D013452 5.3e-07 57.8 74 51.4
BolC3t17446H Brassica oleracea HOM05D011376 ORTHO05D013452 5.3e-07 57.8 74 51.4
MBI01_g16574_MAGBIO Magnolia biondii HOM05D008135 ORTHO05D010260 5.3e-07 57.8 58 56.9
Nn8g38941 Nelumbo nucifera HOM05D008135 ORTHO05D010260 1.5e-06 56.2 47 59.6
Carub.0003s2132 Capsella rubella HOM05D011376 ORTHO05D013452 2.0e-06 55.8 73 53.4
AL3G35350 Arabidopsis lyrata HOM05D011376 ORTHO05D013452 3.4e-06 55.1 73 49.3
Aqoxy2G03851 Aquilegia oxysepala HOM05D008135 ORTHO05D010260 5.9e-06 54.3 48 56.2
Thhalv10021871m.g Eutrema salsugineum HOM05D011376 ORTHO05D013452 5.9e-06 54.3 72 47.2


User provided reference genes

Program Settings