Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 2.3e-138 495.7 287 100.0
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 2.0e-134 482.6 287 88.5
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 2.0e-105 386.3 287 71.1
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 2.2e-104 382.9 287 70.4
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 3.1e-82 309.3 330 56.7
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 2.4e-74 283.1 388 45.4
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.1e-71 274.2 295 52.2
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 2.5e-71 273.1 326 49.7
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 5.5e-71 271.9 333 48.3
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 7.1e-71 271.6 324 48.1
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 9.3e-71 271.2 324 46.6
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 4.6e-70 268.9 317 48.9
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 3.3e-68 262.7 321 48.0
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.6e-67 260.4 317 48.6
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.7e-67 259.2 317 48.9
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-66 257.7 317 47.9
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.1e-66 257.7 322 47.5
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 1.4e-66 257.3 322 47.2
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 4.1e-66 255.8 324 46.6
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 4.1e-66 255.8 323 47.7
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 9.0e-66 254.6 324 46.6
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.2e-65 254.2 318 45.9
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 1.5e-65 253.8 324 45.1
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 2.0e-65 253.4 321 47.0
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.0e-65 253.4 324 46.6
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 3.4e-65 252.7 206 61.7
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 7.7e-65 251.5 323 46.4
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-64 251.1 323 44.9
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 1.7e-64 250.4 322 46.9
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 1.7e-64 250.4 303 49.5
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 2.2e-64 250.0 319 47.0
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.2e-64 250.0 324 44.1
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 5.0e-64 248.8 324 45.7
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 5.0e-64 248.8 325 42.5
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 6.5e-64 248.4 333 42.9
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.4e-63 247.3 317 45.7
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 5.5e-63 245.4 323 44.6
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 5.5e-63 245.4 335 43.9
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 5.5e-63 245.4 333 42.6
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 1.6e-62 243.8 297 45.8
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 1.6e-62 243.8 309 48.2
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.6e-62 243.8 323 42.1
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 1.4e-61 240.7 206 57.3
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 3.0e-61 239.6 318 44.3
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 3.9e-61 239.2 388 40.2
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 5.1e-61 238.8 321 44.5
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 5.1e-61 238.8 333 41.7
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 6.7e-61 238.4 325 43.1
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 6.7e-61 238.4 314 43.0
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.7e-61 238.4 323 42.1
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-60 237.7 301 45.8
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 1.5e-60 237.3 314 43.6
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.0e-60 236.9 313 44.1
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 4.3e-60 235.7 336 42.0
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 9.7e-60 234.6 304 45.4
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.3e-59 234.2 317 45.4
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.3e-59 234.2 315 43.5
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 2.2e-59 233.4 324 44.4
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 1.1e-58 231.1 321 44.9
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 1.4e-58 230.7 295 47.1
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 2.4e-58 229.9 321 43.9
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.3e-58 228.8 312 40.1
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 6.9e-58 228.4 341 41.3
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 9.1e-58 228.0 226 50.0
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 1.2e-57 227.6 319 43.6
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 1.2e-57 227.6 314 43.9
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 2.6e-57 226.5 341 41.1
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 3.4e-57 226.1 321 44.9
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 7.7e-57 224.9 327 40.1
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.0e-56 224.6 313 42.2
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 1.7e-56 223.8 322 44.1
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.9e-56 223.0 317 44.2
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 3.8e-56 222.6 321 43.3
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 6.5e-56 221.9 313 45.0
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 1.1e-55 221.1 229 50.7
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.1e-55 221.1 308 42.5
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.4e-55 220.7 379 36.9
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 2.5e-55 219.9 374 39.0
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 7.2e-55 218.4 334 38.9
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 9.4e-55 218.0 356 39.0
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 4.7e-54 215.7 304 43.1
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 6.1e-54 215.3 230 50.4
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 6.1e-54 215.3 334 40.1
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 7.9e-54 214.9 313 40.6
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.8e-53 213.8 296 42.6
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 3.9e-53 212.6 303 41.9
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 5.1e-53 212.2 304 42.8
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 5.1e-53 212.2 206 54.4
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 8.8e-53 211.5 303 42.6
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 1.5e-52 210.7 304 42.1
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 1.5e-52 210.7 304 42.1
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 2.0e-52 210.3 313 41.2
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 2.6e-52 209.9 305 41.6
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 4.4e-52 209.1 306 41.2
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 7.4e-52 208.4 362 39.5
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 2.2e-51 206.8 303 41.3
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 3.7e-51 206.1 286 43.4
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 4.8e-51 205.7 327 36.7
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.1e-50 204.5 303 40.3
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 2.4e-50 203.4 284 40.1
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 3.1e-50 203.0 306 40.8
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 4.1e-50 202.6 318 40.6
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 3.5e-49 199.5 315 40.0
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.0e-48 198.0 326 36.5
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.3e-48 197.6 232 43.5
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.7e-48 197.2 322 40.1
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 3.8e-48 196.1 326 36.5
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.8e-48 196.1 322 39.8
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 5.0e-48 195.7 290 42.1
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.0e-48 195.7 322 40.1
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 1.1e-47 194.5 204 50.5
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 1.4e-47 194.1 277 41.9
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 3.2e-47 193.0 263 42.6
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 2.1e-46 190.3 305 40.0
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 3.6e-46 189.5 304 38.5
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.7e-46 189.1 311 40.2
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 6.1e-46 188.7 297 39.4
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 5.2e-45 185.7 289 40.5
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 3.3e-44 183.0 290 39.3
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 2.2e-43 180.3 325 33.2
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 3.7e-43 179.5 305 38.4
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 6.3e-43 178.7 305 39.0
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 8.2e-43 178.3 305 38.4
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.1e-42 177.9 301 38.5
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.1e-42 176.4 275 37.5
vmacro00455 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 4.1e-42 176.0 262 42.4
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 1.6e-41 174.1 230 40.9
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.6e-41 173.3 294 37.1
Oeu054535.1 Olea europaea HOM05D002342 ORTHO05D002407 7.7e-41 171.8 246 40.2
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 7.7e-41 171.8 320 33.4
Lj6A525G37 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-40 171.0 251 41.8
Oeu054534.1 Olea europaea HOM05D002342 ORTHO05D002407 1.7e-40 170.6 246 39.8
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 6.5e-40 168.7 305 38.7
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 6.5e-40 168.7 320 32.5
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 5.5e-39 165.6 305 37.7
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 4.7e-38 162.5 308 34.7
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 6.1e-38 162.2 305 38.0
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 1.4e-37 161.0 230 36.5
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.8e-37 160.6 206 43.2
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 4.0e-37 159.5 235 40.9
SEGI_11248 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 8.8e-37 158.3 212 39.6
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.4e-36 156.0 206 39.8
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.3e-35 154.5 206 39.3
HPP92_020882 Vanilla planifolia HOM05D002342 ORTHO05D002407 6.3e-35 152.1 287 31.7
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 4.1e-34 149.4 237 41.4
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 6.5e-32 142.1 284 35.9
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 4.8e-27 125.9 291 29.6
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 5.4e-26 122.5 196 37.2
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.0e-21 106.7 101 46.5
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 6.6e-16 89.0 66 60.6
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 1.9e-15 87.4 70 57.1
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 4.3e-15 86.3 63 61.9
AagrBONN_evm.TU.Sc2ySwM_228.1730 Anthoceros agrestis HOM05D002342 ORTHO05D002407 3.1e-13 80.1 180 28.3
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 3.1e-13 80.1 62 59.7
Prupe.1G358100 Prunus persica HOM05D002342 ORTHO05D002407 3.4e-12 76.6 149 40.3
FAN22G1019 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.4e-12 76.3 213 31.9
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.7e-11 74.3 61 55.7
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 6.4e-11 72.4 138 36.2
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 1.2e-09 68.2 138 36.2
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-08 64.7 54 53.7
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 6.6e-08 62.4 124 42.7
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 3.3e-07 60.1 127 37.8
Actinidia38750 Actinidia chinensis HOM05D002342 ORTHO05D002407 5.6e-07 59.3 131 38.9
Cre14.g608150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 9.5e-07 58.5 68 38.2
Cre14.g608200 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 9.5e-07 58.5 68 38.2
Cfa014942 Carpinus fangiana HOM05D002342 ORTHO05D002407 4.7e-06 56.2 41 61.0


User provided reference genes

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