Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 2.6e-127 458.8 235 100.0
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.2e-95 353.6 243 80.7
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 4.3e-82 308.5 251 66.9
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.8e-81 305.8 255 67.5
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.1e-80 303.9 231 69.7
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 2.4e-80 302.8 232 70.3
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.4e-80 302.8 234 71.4
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 4.0e-80 302.0 243 68.3
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 4.0e-80 302.0 250 70.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 9.0e-80 300.8 235 71.1
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.5e-79 300.1 225 70.7
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 2.0e-79 299.7 236 69.5
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 7.6e-79 297.7 238 68.1
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.7e-78 296.6 245 66.5
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 3.8e-78 295.4 236 67.4
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 8.4e-78 294.3 227 70.0
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.1e-77 293.9 234 69.7
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.1e-77 293.9 244 65.6
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.4e-77 293.5 222 71.2
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 2.5e-77 292.7 246 65.9
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 3.2e-77 292.4 244 67.2
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 7.1e-77 291.2 240 65.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 9.3e-77 290.8 226 70.8
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 9.3e-77 290.8 221 69.7
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.2e-76 290.4 221 70.1
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.6e-76 290.0 240 66.7
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 3.5e-76 288.9 230 67.4
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.3e-75 287.0 238 66.0
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.8e-75 286.6 224 69.6
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.3e-75 286.2 221 67.0
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.3e-75 286.2 221 67.0
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 3.9e-75 285.4 219 70.8
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.1e-75 285.0 221 66.1
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 8.7e-75 284.3 254 65.4
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.5e-74 283.5 238 66.0
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.5e-74 282.7 227 63.9
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 2.5e-74 282.7 242 66.1
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.5e-74 282.7 223 66.8
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 4.3e-74 282.0 254 65.0
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 5.7e-74 281.6 237 64.6
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 7.4e-74 281.2 228 66.2
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 9.6e-74 280.8 243 64.6
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.3e-73 280.4 221 67.9
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 3.7e-73 278.9 222 66.2
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 8.2e-73 277.7 221 65.2
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.2e-73 277.7 222 64.4
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.1e-72 277.3 221 66.1
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 3.1e-72 275.8 222 65.8
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 3.1e-72 275.8 222 65.8
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 3.1e-72 275.8 226 65.9
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.3e-72 275.0 222 64.0
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 6.9e-72 274.6 245 62.9
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 6.9e-72 274.6 224 64.7
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.2e-71 273.9 224 64.7
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.5e-71 273.5 222 68.0
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.7e-70 270.0 223 65.0
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 2.2e-70 269.6 227 63.4
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.9e-70 269.2 226 63.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 2.9e-70 269.2 247 61.9
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.9e-70 269.2 231 64.9
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.0e-70 268.5 284 58.5
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 6.5e-70 268.1 227 63.0
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.4e-69 266.9 226 61.9
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.9e-69 266.5 238 61.8
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 9.3e-69 264.2 232 63.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.7e-68 262.7 207 69.6
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.7e-68 262.7 232 63.4
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 3.5e-68 262.3 153 82.4
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.6e-68 261.9 238 60.9
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.6e-68 261.9 238 60.9
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.1e-68 261.5 240 58.8
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.0e-67 260.8 223 63.2
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.3e-67 259.6 221 61.5
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.7e-67 258.1 221 62.0
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 6.7e-67 258.1 234 61.5
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.1e-66 257.3 229 64.2
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.9e-66 256.5 223 62.3
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 2.5e-66 256.1 263 55.1
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.5e-66 256.1 225 64.4
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 4.3e-66 255.4 222 64.0
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 7.4e-66 254.6 235 59.1
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.3e-65 253.8 258 57.4
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 4.8e-65 251.9 213 65.3
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 8.2e-65 251.1 217 63.6
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 8.2e-65 251.1 200 65.0
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.4e-64 250.4 267 54.7
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.4e-64 250.4 155 77.4
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 5.3e-64 248.4 237 59.9
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 5.3e-64 248.4 230 58.3
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.5e-63 246.9 227 64.3
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 4.5e-63 245.4 198 69.2
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 4.5e-63 245.4 227 60.4
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 5.9e-63 245.0 218 61.0
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 7.7e-63 244.6 213 61.0
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.2e-62 243.0 236 55.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.2e-61 239.2 285 53.3
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 6.1e-60 235.0 236 56.8
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 6.1e-60 235.0 225 59.6
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.4e-56 223.8 173 63.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 2.4e-56 223.0 229 53.3
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.4e-55 219.2 152 71.1
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.4e-55 219.2 173 62.4
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.2e-54 216.5 213 61.0
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 9.4e-53 211.1 173 66.5
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.7e-52 209.5 132 75.0
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.7e-49 200.3 156 64.1
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.7e-46 190.3 227 53.3
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.2e-46 189.9 217 55.3
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.0e-46 188.7 221 49.8
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.7e-44 182.2 179 53.1
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.8e-43 180.3 176 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 7.5e-42 174.9 138 60.9
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 8.2e-41 171.4 189 51.3
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.1e-40 171.0 160 59.4
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.8e-40 170.2 113 70.8
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 4.5e-39 165.6 133 64.7
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 5.0e-38 162.2 134 54.5
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.5e-37 159.8 134 56.0
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.4e-34 149.1 93 82.8
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.3e-33 147.5 189 49.7
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 2.8e-33 146.4 91 82.4
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 2.2e-30 136.7 70 87.1
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.8e-27 127.1 134 58.2
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 2.3e-22 110.2 53 88.7
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.1e-20 103.6 100 58.0
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 1.8e-19 100.5 72 70.8
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.8e-16 90.5 54 77.8
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 5.4e-16 89.0 127 48.8
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 2.7e-15 86.7 194 34.0
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 9.8e-10 68.2 192 31.8
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 2.9e-09 66.6 128 29.7
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 2.9e-09 66.6 36 80.6


User provided reference genes

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