Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p011362 Quercus lobata HOM05D007444 ORTHO05D009359 9.8e-48 193.7 116 100.0
QL05p011272 Quercus lobata HOM05D007444 ORTHO05D009359 5.8e-32 141.4 104 79.8
QL05p011652 Quercus lobata HOM05D007444 ORTHO05D009359 2.9e-31 139.0 104 85.6
FAN14G4700 Fragaria x ananassa HOM05D007444 ORTHO05D009359 3.4e-24 115.5 114 67.5
FAN09G3948 Fragaria x ananassa HOM05D007444 ORTHO05D009359 8.4e-23 110.9 114 64.9
QL05p010901 Quercus lobata HOM05D007444 ORTHO05D009359 2.4e-22 109.4 62 91.9
FvH4_6g33680 Fragaria vesca HOM05D007444 ORTHO05D009359 2.1e-21 106.3 103 67.0
MD09G1191700 Malus domestica HOM05D007444 ORTHO05D009359 1.7e-20 103.2 115 51.3
CiPaw.02G139200 Carya illinoinensis HOM05D007444 ORTHO05D009359 3.0e-20 102.4 105 54.3
CSS0030092 Camellia sinensis var. sinensis HOM05D007444 ORTHO05D009359 1.8e-17 93.2 102 49.0
RcHm_v2.0_Chr2g0143591 Rosa chinensis HOM05D007444 ORTHO05D009359 3.1e-17 92.4 107 57.0
Ciclev10026127m.g Citrus clementina HOM05D007444 ORTHO05D009359 2.6e-16 89.4 118 55.9
vmacro17027 Vaccinium macrocarpon HOM05D007444 ORTHO05D009359 4.5e-16 88.6 104 45.2
Actinidia09035 Actinidia chinensis HOM05D007444 ORTHO05D009359 1.3e-15 87.0 104 48.1
TAR383G0129 Trochodendron aralioides HOM05D007444 ORTHO05D009359 4.9e-15 85.1 113 41.6
Haze_15975 Corylus avellana HOM05D007444 ORTHO05D009359 1.1e-14 84.0 120 60.8
Manes.11G025100 Manihot esculenta HOM05D007444 ORTHO05D009359 1.9e-14 83.2 113 52.2
Lj9A520T86 Lonicera japonica HOM05D007444 ORTHO05D009359 3.2e-14 82.4 111 40.5
Prupe.3G047900 Prunus persica HOM05D007444 ORTHO05D009359 4.2e-14 82.0 97 56.7
PSO017G2704 Papaver somniferum HOM05D007444 ORTHO05D009359 2.7e-13 79.3 111 43.2
Lalb_Chr14g0372751 Lupinus albus HOM05D007444 ORTHO05D009359 3.5e-13 79.0 103 39.8
Glyma.15G024900 Glycine max HOM05D007444 ORTHO05D009359 7.9e-13 77.8 96 43.8
MBI01_g20340_MAGBIO Magnolia biondii HOM05D007444 ORTHO05D009359 1.3e-12 77.0 114 42.1
Oeu039953.1 Olea europaea HOM05D007444 ORTHO05D009359 1.3e-12 77.0 111 48.6
CsaV3_3G043760 Cucumis sativus L. HOM05D007444 ORTHO05D009359 3.0e-12 75.9 111 39.6
GSVIVG01016873001 Vitis vinifera HOM05D007444 ORTHO05D009359 3.0e-12 75.9 96 49.0
Medtr2g099820 Medicago truncatula HOM05D007444 ORTHO05D009359 5.1e-12 75.1 92 41.3
QL05p010974 Quercus lobata HOM05D007444 ORTHO05D009359 8.7e-12 74.3 104 63.5
Ca_01210_v3 Cicer arietinum L. HOM05D007444 ORTHO05D009359 1.1e-11 73.9 102 38.2
Phvul.005G158200 Phaseolus vulgaris HOM05D007444 ORTHO05D009359 1.1e-11 73.9 96 40.6
Hund20831 Selenicereus undatus HOM05D007444 ORTHO05D009359 1.1e-11 73.9 99 45.5
Potri.001G196700 Populus trichocarpa HOM05D007444 ORTHO05D009359 1.5e-11 73.6 115 40.0
PSO478G1587 Papaver somniferum HOM05D007444 ORTHO05D009359 1.9e-11 73.2 103 45.6
Cc04_g01830 Coffea canephora HOM05D007444 ORTHO05D009359 3.3e-11 72.4 97 44.3
Nitab4.5_0005918g0020 Nicotiana tabacum HOM05D007444 ORTHO05D009359 4.3e-11 72.0 98 55.1
MSTRG.4771 Avicennia marina HOM05D007444 ORTHO05D009359 7.4e-11 71.2 114 46.5
Cfa003571 Carpinus fangiana HOM05D007444 ORTHO05D009359 9.6e-11 70.9 119 56.3
Aqoxy7G01186 Aquilegia oxysepala HOM05D007444 ORTHO05D009359 1.3e-10 70.5 111 35.1
Nitab4.5_0000255g0240 Nicotiana tabacum HOM05D007444 ORTHO05D009359 2.1e-10 69.7 81 55.6
Eucgr.F03140 Eucalyptus grandis HOM05D007444 ORTHO05D009359 4.8e-10 68.6 118 39.0
ClCG07G013830 Citrullus lanatus HOM05D007444 ORTHO05D009359 6.2e-10 68.2 115 36.5
Sed0011511 Sechium edule HOM05D007444 ORTHO05D009359 8.1e-10 67.8 91 39.6
TPR.G6573 Trifolium pratense HOM05D007444 ORTHO05D009359 1.1e-09 67.4 87 39.1
MELO3C013088.2 Cucumis melo HOM05D007444 ORTHO05D009359 1.8e-09 66.6 111 51.4
AUR62009843 Chenopodium quinoa HOM05D007444 ORTHO05D009359 9.0e-09 64.3 82 45.1
Sc12g0010310 Simmondsia chinensis HOM05D007444 ORTHO05D009359 1.2e-08 63.9 82 40.2
Lj3g0023369 Lotus japonicus HOM05D007444 ORTHO05D009359 2.0e-08 63.2 102 44.1
SGA_v2.0_scaffold68G22914 Striga asiatica HOM05D007444 ORTHO05D009359 2.0e-08 63.2 119 48.7
Duzib235G0092 Durio zibethinus HOM05D007444 ORTHO05D009359 2.6e-08 62.8 108 40.7
Lsat_1_v5_gn_1_35640 Lactuca sativa HOM05D007444 ORTHO05D009359 4.5e-08 62.0 112 50.0
AL3G25850 Arabidopsis lyrata HOM05D007444 ORTHO05D009359 7.6e-08 61.2 114 42.1
HanXRQChr02g0031731 Helianthus annuus HOM05D007444 ORTHO05D009359 2.2e-07 59.7 83 54.2
TWI36G0277 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 2.2e-07 59.7 93 55.9
TWI36G1725 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 2.2e-07 59.7 93 55.9
Psat5g292040 Pisum sativum HOM05D007444 ORTHO05D009359 3.8e-07 58.9 99 37.4
Ah.08g216430 Amaranthus hybridus HOM05D007444 ORTHO05D009359 8.4e-07 57.8 96 47.9
DCAR_022704 Daucus carota HOM05D007444 ORTHO05D009359 8.4e-07 57.8 111 49.5
ECA247G2926 Erigeron canadensis HOM05D000045 ORTHO05D000067 7.1e-06 54.7 81 58.0


User provided reference genes

Program Settings