Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.1e-53 213.0 104 100.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 4.3e-42 174.5 92 95.7
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 7.9e-28 127.1 93 69.9
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 7.9e-28 127.1 92 71.7
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 3.0e-27 125.2 93 67.7
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 9.6e-26 120.2 93 65.6
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 3.7e-25 118.2 93 65.6
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.1e-24 114.8 93 64.5
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 5.3e-24 114.4 93 62.4
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 5.3e-24 114.4 94 62.8
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 6.9e-24 114.0 93 63.4
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.6e-23 112.1 93 58.1
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 3.4e-23 111.7 93 60.2
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 4.5e-23 111.3 93 62.4
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 5.8e-23 110.9 93 61.3
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 5.8e-23 110.9 93 61.3
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.7e-22 109.4 93 60.2
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.9e-22 108.6 93 60.2
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 8.4e-22 107.1 94 62.8
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.4e-21 106.3 94 58.5
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 7.2e-21 104.0 93 61.3
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 9.3e-21 103.6 93 55.9
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 1.6e-20 102.8 95 55.8
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.1e-20 102.4 93 55.9
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 2.7e-20 102.1 92 58.7
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 6.1e-20 100.9 94 56.4
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 6.1e-20 100.9 93 59.1
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 1.0e-19 100.1 93 53.8
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.3e-19 99.8 92 56.5
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.8e-19 99.4 92 55.4
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 3.9e-19 98.2 95 54.7
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.5e-18 95.5 95 52.6
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 5.7e-18 94.4 93 57.0
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 7.4e-18 94.0 93 51.6
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.6e-17 92.8 94 57.4
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 2.8e-17 92.0 98 54.1
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.8e-17 91.3 96 51.0
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 4.8e-17 91.3 96 51.0
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 8.2e-17 90.5 96 50.0
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.4e-16 89.0 94 47.9
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.2e-15 86.7 93 49.5
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.2e-15 86.7 93 51.6
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.5e-15 86.3 93 53.8
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.5e-15 86.3 94 45.7
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 4.5e-15 84.7 94 50.0
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 7.7e-15 84.0 98 46.9
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.0e-14 83.6 93 48.4
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.0e-14 83.6 94 54.3
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.0e-14 83.6 104 48.1
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.3e-14 83.2 93 48.4
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 3.8e-14 81.6 94 47.9
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.8e-14 81.6 93 47.3
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 3.8e-14 81.6 93 48.4
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 6.5e-14 80.9 93 50.5
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 6.5e-14 80.9 93 45.2
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 8.5e-14 80.5 96 50.0
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.1e-13 80.1 93 47.3
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.9e-13 79.3 93 46.2
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.9e-13 79.3 93 46.2
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.9e-13 79.3 93 46.2
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 2.5e-13 79.0 93 49.5
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 4.2e-13 78.2 95 44.2
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 5.5e-13 77.8 93 45.2
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 5.5e-13 77.8 94 46.8
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 5.5e-13 77.8 92 46.7
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 1.2e-12 76.6 98 50.0
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.6e-12 76.3 93 45.2
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.6e-12 76.3 94 47.9
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.6e-12 76.3 93 45.2
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 2.1e-12 75.9 94 44.7
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 3.6e-12 75.1 94 47.9
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 4.6e-12 74.7 94 46.8
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 4.6e-12 74.7 103 42.7
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 4.6e-12 74.7 93 49.5
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 6.1e-12 74.3 94 46.8
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 6.1e-12 74.3 94 46.8
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 6.1e-12 74.3 94 46.8
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 7.9e-12 73.9 93 39.8
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.4e-11 73.2 93 46.2
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.8e-11 72.8 96 44.8
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.3e-11 72.4 92 52.2
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 3.0e-11 72.0 95 44.2
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.0e-11 72.0 92 51.1
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 5.1e-11 71.2 115 40.0
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 6.7e-11 70.9 93 47.3
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.1e-10 70.1 99 43.4
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 1.1e-10 70.1 61 59.0
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.1e-10 70.1 98 45.9
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.0e-10 69.3 96 44.8
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 3.3e-10 68.6 95 49.5
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 4.3e-10 68.2 95 49.5
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 4.3e-10 68.2 91 47.3
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 4.3e-10 68.2 96 44.8
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 5.7e-10 67.8 97 49.5
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.3e-09 66.6 94 46.8
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.3e-09 66.6 95 48.4
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.3e-09 66.6 96 44.8
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.7e-09 66.2 90 37.8
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 3.7e-09 65.1 96 47.9
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.4e-08 63.2 95 46.3
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 1.2e-07 60.1 94 44.7
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.5e-07 59.7 76 40.8
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 1.5e-07 59.7 98 44.9
Sc15g0000290 Simmondsia chinensis HOM05D006233 ORTHO05D007247 1.0e-06 57.0 129 29.5
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.3e-06 56.6 105 38.1
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.7e-06 56.2 93 39.8
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.2e-06 55.8 93 40.9
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 3.8e-06 55.1 110 36.4
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 5.0e-06 54.7 86 40.7


User provided reference genes

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