Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 2.8e-35 151.8 97 100.0
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 9.3e-23 110.2 93 79.6
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.7e-22 108.6 93 81.7
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.0e-22 107.5 97 77.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 2.1e-19 99.0 96 71.9
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.8e-19 98.6 91 78.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 3.7e-19 98.2 93 72.0
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 3.7e-19 98.2 91 78.0
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.4e-18 96.3 91 78.0
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 6.9e-18 94.0 91 75.8
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 6.9e-18 94.0 92 71.7
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 6.9e-18 94.0 91 76.9
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 9.0e-18 93.6 97 70.1
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.0e-18 93.6 91 74.7
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.2e-17 93.2 98 73.5
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.5e-17 92.8 87 79.3
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.5e-17 92.8 87 79.3
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 2.6e-17 92.0 93 72.0
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 4.5e-17 91.3 91 73.6
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.5e-17 91.3 96 71.9
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.3e-16 89.7 93 68.8
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 3.8e-16 88.2 92 70.7
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 8.4e-16 87.0 97 69.1
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 8.4e-16 87.0 92 68.5
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 8.4e-16 87.0 78 76.9
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.1e-15 86.7 96 68.8
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.9e-15 85.9 96 69.8
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.2e-15 84.7 89 71.9
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.2e-15 84.7 89 71.9
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.2e-15 84.7 89 71.9
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 7.1e-15 84.0 89 71.9
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 7.1e-15 84.0 89 71.9
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 9.3e-15 83.6 89 71.9
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.3e-15 83.6 97 63.9
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 9.3e-15 83.6 97 68.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 9.3e-15 83.6 102 68.6
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.2e-14 83.2 48 81.2
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.6e-14 82.8 84 75.0
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.6e-14 82.8 88 70.5
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.6e-14 82.8 87 71.3
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 2.7e-14 82.0 98 67.3
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 3.5e-14 81.6 92 67.4
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.6e-14 81.3 80 75.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 7.9e-14 80.5 92 67.4
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.3e-13 79.7 89 70.8
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 1.8e-13 79.3 62 71.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.8e-13 79.3 97 49.5
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 3.9e-13 78.2 97 67.0
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 3.9e-13 78.2 89 71.9
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 5.1e-13 77.8 90 72.2
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 5.1e-13 77.8 102 64.7
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.7e-13 77.4 88 70.5
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 8.7e-13 77.0 97 64.9
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 8.7e-13 77.0 89 66.3
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 8.7e-13 77.0 84 69.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.1e-12 76.6 95 67.4
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.1e-12 76.6 88 67.0
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-12 76.3 88 69.3
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.5e-12 76.3 97 63.9
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.5e-12 76.3 93 63.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.3e-12 75.1 90 65.6
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 4.3e-12 74.7 84 70.2
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.3e-12 74.7 56 66.1
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 4.3e-12 74.7 92 46.7
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 4.3e-12 74.7 72 79.2
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 5.7e-12 74.3 74 74.3
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.7e-12 74.3 90 67.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 5.7e-12 74.3 93 64.5
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.4e-12 73.9 90 65.6
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 9.7e-12 73.6 96 65.6
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 9.7e-12 73.6 97 61.9
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.3e-11 73.2 97 61.9
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.3e-11 73.2 92 66.3
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.3e-11 73.2 97 63.9
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.6e-11 72.8 48 72.9
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-11 72.4 90 62.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.2e-11 72.4 85 48.2
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.2e-11 72.4 83 67.5
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 2.8e-11 72.0 78 60.3
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.8e-11 72.0 78 69.2
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 2.8e-11 72.0 78 60.3
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 2.8e-11 72.0 82 68.3
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.8e-11 72.0 86 67.4
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.8e-11 72.0 79 65.8
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.8e-11 72.0 72 77.8
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.8e-11 72.0 84 50.0
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 3.7e-11 71.6 81 65.4
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 6.3e-11 70.9 90 64.4
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.3e-11 70.9 90 64.4
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.1e-10 70.1 88 46.6
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.1e-10 70.1 77 70.1
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.4e-10 69.7 79 63.3
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.4e-10 69.7 79 63.3
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.8e-10 69.3 91 62.6
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.8e-10 69.3 81 65.4
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.4e-10 68.9 62 54.8
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 3.1e-10 68.6 91 62.6
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.1e-10 68.6 61 57.4
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 4.1e-10 68.2 96 59.4
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 5.3e-10 67.8 78 67.9
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 5.3e-10 67.8 95 58.9
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 5.3e-10 67.8 90 41.1
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 5.3e-10 67.8 86 50.0
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 5.3e-10 67.8 90 62.2
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 5.3e-10 67.8 95 62.1
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 5.3e-10 67.8 85 63.5
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 6.9e-10 67.4 78 65.4
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 6.9e-10 67.4 68 51.5
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 6.9e-10 67.4 84 65.5
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 9.0e-10 67.0 82 48.8
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 1.2e-09 66.6 74 51.4
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.2e-09 66.6 63 54.0
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.5e-09 66.2 89 60.7
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.5e-09 66.2 85 61.2
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.5e-09 66.2 94 43.6
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 2.6e-09 65.5 80 62.5
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.6e-09 65.5 86 60.5
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 3.4e-09 65.1 62 54.8
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.4e-09 65.1 62 51.6
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 7.6e-09 63.9 77 67.5
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 7.6e-09 63.9 87 41.4
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 7.6e-09 63.9 37 81.1
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 7.6e-09 63.9 61 52.5
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.7e-08 62.8 129 38.0
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 2.2e-08 62.4 53 62.3
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 3.8e-08 61.6 87 47.1
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.8e-08 61.6 86 62.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.8e-08 61.6 106 36.8
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 6.5e-08 60.8 91 45.1
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 1.9e-07 59.3 58 60.3
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 1.9e-07 59.3 49 65.3
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 2.5e-07 58.9 88 64.8
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 3.2e-07 58.5 88 43.2
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 3.2e-07 58.5 44 65.9
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 3.2e-07 58.5 97 42.3
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 5.5e-07 57.8 60 63.3
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 5.5e-07 57.8 51 56.9
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.5e-07 57.8 89 59.6
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.5e-07 57.8 40 70.0
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.2e-07 57.4 56 50.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 9.3e-07 57.0 48 58.3
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.6e-06 56.2 47 57.4
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 2.7e-06 55.5 125 41.6
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 2.7e-06 55.5 62 46.8
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.6e-06 55.1 63 47.6
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 4.6e-06 54.7 74 43.2
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 4.6e-06 54.7 92 41.3
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 6.1e-06 54.3 124 32.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 6.1e-06 54.3 128 30.5
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 6.1e-06 54.3 86 43.0
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 7.9e-06 53.9 131 31.3
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 7.9e-06 53.9 63 47.6
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.9e-06 53.9 63 47.6
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.9e-06 53.9 63 47.6


User provided reference genes

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