Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 7.2e-195 683.7 343 100.0
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.7e-55 220.7 351 45.6
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 7.3e-54 215.3 358 43.3
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 8.9e-52 208.4 351 44.4
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 7.5e-43 178.7 336 41.4
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.9e-42 176.8 275 43.3
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.7e-42 176.4 289 42.6
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 7.1e-41 172.2 267 46.1
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.1e-40 170.6 189 55.0
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 6.0e-40 169.1 129 69.8
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.6e-39 165.6 198 53.0
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.5e-38 163.7 268 44.0
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.3e-38 162.2 275 42.5
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.3e-38 162.2 275 42.5
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.3e-38 162.2 250 43.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 9.5e-38 161.8 250 43.2
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.6e-37 161.0 238 46.6
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.6e-37 161.0 286 41.3
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.1e-37 160.6 177 54.2
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 6.2e-37 159.1 183 51.9
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.8e-36 157.5 263 43.0
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 6.8e-36 155.6 244 42.6
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 6.8e-36 155.6 253 43.1
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 8.9e-36 155.2 168 54.8
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 8.9e-36 155.2 225 48.4
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 5.8e-35 152.5 246 43.1
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 5.8e-35 152.5 190 51.1
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 9.9e-35 151.8 276 39.5
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.7e-34 151.0 345 36.8
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 4.9e-34 149.4 191 49.2
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 6.4e-34 149.1 261 43.3
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.1e-33 148.3 350 36.6
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 1.9e-33 147.5 265 40.0
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.4e-33 147.1 296 38.9
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 5.4e-33 146.0 185 49.7
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 7.1e-33 145.6 180 51.7
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.2e-32 144.8 296 37.2
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.6e-32 144.4 202 48.0
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.7e-32 143.7 229 43.2
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 4.6e-32 142.9 229 41.5
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.0e-31 141.7 210 46.2
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.0e-31 141.7 170 51.2
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.3e-31 141.4 219 43.8
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.7e-31 141.0 354 34.2
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.3e-31 140.6 180 50.0
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 8.6e-31 138.7 266 40.2
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.5e-30 137.9 187 47.1
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.9e-30 137.5 190 47.9
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.9e-30 137.5 284 37.0
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 3.3e-30 136.7 177 50.3
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 4.3e-30 136.3 174 48.9
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 5.6e-30 136.0 176 48.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 9.6e-30 135.2 166 49.4
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.6e-29 134.4 200 44.0
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.1e-29 134.0 288 37.5
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 3.6e-29 133.3 131 58.8
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 6.2e-29 132.5 203 46.3
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 8.1e-29 132.1 173 49.1
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 8.1e-29 132.1 208 42.8
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 8.1e-29 132.1 189 44.4
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.1e-28 131.7 214 42.5
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.1e-28 131.7 282 37.2
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.4e-28 131.3 192 45.8
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.8e-28 131.0 193 42.5
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 4.0e-28 129.8 175 49.7
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.0e-28 129.8 278 37.4
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 5.2e-28 129.4 317 34.7
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 6.8e-28 129.0 177 46.3
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 6.8e-28 129.0 282 36.9
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 8.9e-28 128.6 218 43.6
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 8.9e-28 128.6 241 39.4
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.2e-27 128.3 177 45.8
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.4e-27 126.7 168 48.8
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.6e-27 125.6 283 37.1
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 9.9e-27 125.2 282 36.5
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 9.9e-27 125.2 159 47.8
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.3e-26 124.8 203 41.9
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.2e-26 124.0 355 34.9
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.9e-26 122.9 193 45.6
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 6.4e-26 122.5 236 38.6
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 8.4e-26 122.1 278 37.1
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.4e-25 121.3 262 35.5
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 2.4e-25 120.6 270 36.7
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 2.4e-25 120.6 127 55.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 3.2e-25 120.2 175 44.6
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 5.4e-25 119.4 270 36.3
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 5.4e-25 119.4 355 32.4
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 7.1e-25 119.0 223 39.0
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 3.5e-24 116.7 170 44.7
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 3.5e-24 116.7 177 44.6
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.6e-24 116.3 106 63.2
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 6.0e-24 115.9 162 43.8
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.0e-24 115.9 361 31.0
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.0e-23 115.2 186 43.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.0e-23 113.6 177 42.4
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 5.1e-23 112.8 264 36.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.5e-22 111.3 227 38.3
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 5.6e-22 109.4 89 65.2
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 5.6e-22 109.4 165 43.6
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.6e-21 107.8 206 39.3
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.6e-21 107.8 210 39.5
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 2.8e-21 107.1 173 42.8
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 3.6e-21 106.7 268 35.1
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 6.2e-21 105.9 248 34.7
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.4e-20 104.8 233 34.8
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.4e-20 104.8 317 31.5
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 3.1e-20 103.6 298 33.6
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 5.3e-20 102.8 110 53.6
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 6.9e-20 102.4 163 44.2
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 2.0e-19 100.9 90 60.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 4.4e-19 99.8 127 49.6
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 5.8e-19 99.4 173 40.5
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 5.8e-19 99.4 206 38.3
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 7.6e-19 99.0 213 36.6
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 7.6e-19 99.0 178 39.9
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.8e-18 96.7 158 43.7
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.9e-18 96.3 176 37.5
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 8.4e-18 95.5 288 30.2
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-17 95.1 88 56.8
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.1e-17 95.1 99 53.5
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.4e-17 94.7 175 41.1
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.2e-17 93.2 131 46.6
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.2e-17 93.2 86 58.1
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 5.4e-17 92.8 87 58.6
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 5.4e-17 92.8 161 37.9
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 9.3e-17 92.0 255 34.5
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 9.3e-17 92.0 174 39.1
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.2e-16 91.7 175 36.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.2e-16 91.7 86 57.0
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.6e-16 91.3 215 36.3
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.6e-16 91.3 86 59.3
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 2.1e-16 90.9 153 41.2
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 2.7e-16 90.5 65 67.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 4.6e-16 89.7 176 35.2
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.3e-15 88.2 248 33.1
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.3e-15 88.2 248 33.1
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 3.9e-15 86.7 121 45.5
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.9e-15 86.7 179 36.3
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 9.0e-12 75.5 99 46.5
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.4e-09 67.4 121 37.2
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.0e-07 62.0 206 29.1
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 4.3e-06 56.6 40 72.5


User provided reference genes

Program Settings