Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.3e-216 756.1 390 100.0
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.5e-119 433.0 348 68.1
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.4e-109 400.6 303 71.3
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 3.4e-108 396.0 349 61.0
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 5.8e-108 395.2 345 61.7
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.2e-107 393.3 362 60.5
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 4.9e-107 392.1 353 60.6
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 8.4e-107 391.3 364 61.0
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.2e-106 389.4 353 60.3
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.6e-105 385.6 354 59.9
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 6.0e-105 385.2 351 61.5
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 5.1e-104 382.1 353 58.6
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 1.9e-103 380.2 322 61.8
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 3.3e-103 379.4 343 60.1
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 5.6e-103 378.6 317 63.7
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 9.6e-103 377.9 354 60.5
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.6e-102 377.1 356 60.1
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 4.8e-102 375.6 350 59.1
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 1.1e-101 374.4 367 58.3
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 1.8e-101 373.6 309 65.0
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 9.0e-101 371.3 356 57.9
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 9.0e-101 371.3 321 61.1
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.2e-100 370.9 316 60.8
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 1.5e-100 370.5 358 57.8
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.5e-100 370.5 395 54.2
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 4.5e-100 369.0 316 61.1
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 7.6e-100 368.2 350 61.4
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.7e-99 367.1 350 60.3
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 2.2e-99 366.7 366 56.0
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 4.9e-99 365.5 354 57.9
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 8.4e-99 364.8 349 59.6
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 1.1e-98 364.4 351 56.1
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.4e-98 364.0 350 59.4
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.9e-98 363.6 320 60.3
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 3.2e-98 362.8 319 60.8
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 3.2e-98 362.8 356 57.6
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 5.5e-98 362.1 356 56.7
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 7.1e-98 361.7 352 56.8
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.7e-97 359.8 355 53.2
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 2.3e-96 356.7 356 55.3
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 5.1e-96 355.5 355 54.6
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 5.1e-96 355.5 358 53.6
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 2.5e-95 353.2 359 55.7
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.3e-94 350.9 319 57.4
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.6e-94 350.5 331 59.2
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 1.6e-94 350.5 356 54.8
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 4.8e-94 349.0 378 52.4
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 8.2e-94 348.2 312 58.3
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 3.1e-93 346.3 335 56.7
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 6.9e-93 345.1 350 54.3
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 2.6e-92 343.2 318 56.9
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 4.5e-92 342.4 300 62.3
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 7.6e-92 341.7 295 61.7
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 8.4e-91 338.2 326 55.5
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 1.4e-90 337.4 315 58.7
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 2.5e-90 336.7 363 53.4
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 7.2e-90 335.1 312 59.3
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.6e-89 334.0 310 57.1
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.6e-89 334.0 296 58.1
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 1.0e-88 331.3 359 52.9
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 2.3e-88 330.1 326 54.6
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 2.3e-88 330.1 360 51.1
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 2.5e-87 326.6 356 52.2
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 3.3e-87 326.2 314 55.7
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.6e-86 323.9 318 55.3
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 9.0e-85 318.2 317 57.7
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 9.0e-85 318.2 348 53.4
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.5e-84 317.4 325 54.2
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.0e-84 317.0 305 53.8
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 2.6e-84 316.6 321 53.0
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.6e-84 316.6 269 65.1
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 3.4e-84 316.2 291 58.8
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 5.9e-84 315.5 320 55.3
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.3e-83 314.3 362 48.9
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 3.8e-83 312.8 365 48.8
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 5.0e-83 312.4 312 54.2
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 2.5e-82 310.1 365 48.5
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 1.1e-79 301.2 362 46.4
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 1.1e-79 301.2 362 46.4
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 2.5e-79 300.1 384 45.6
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 2.5e-79 300.1 384 45.6
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 7.4e-79 298.5 361 46.5
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 2.2e-78 297.0 322 50.0
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.4e-77 294.3 356 49.4
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.8e-77 293.9 366 48.4
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 6.9e-77 292.0 356 49.2
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 9.1e-77 291.6 320 50.3
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 6.3e-70 268.9 249 57.0
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 3.1e-69 266.5 257 57.6
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 5.9e-68 262.3 357 46.2
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 2.9e-67 260.0 264 53.4
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 8.5e-67 258.5 206 64.1
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.3e-64 250.4 220 61.8
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 6.3e-62 242.3 361 42.1
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 4.5e-60 236.1 348 43.1
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 9.4e-58 228.4 208 62.5
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.1e-57 227.3 211 55.5
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 6.8e-56 222.2 240 49.2
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.6e-52 211.1 217 53.0
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 5.9e-52 209.1 149 72.5
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 4.2e-50 203.0 297 40.7
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 1.8e-40 171.0 146 63.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.6e-33 146.7 151 53.0
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.8e-32 144.4 186 42.5
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 4.7e-17 93.2 220 33.2
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 2.6e-15 87.4 56 76.8
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 2.9e-14 84.0 56 73.2
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 8.4e-14 82.4 239 28.5
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.4e-13 81.6 56 64.3
QL02p082541 Quercus lobata HOM05D000114 ORTHO05D000075 1.3e-11 75.1 50 82.0
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 2.3e-11 74.3 246 29.3
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 3.0e-11 73.9 314 26.8
QL04p093089 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-11 73.9 54 74.1
QL08p013026 Quercus lobata HOM05D003259 ORTHO05D003695 5.1e-11 73.2 49 79.6
QL03p058257 Quercus lobata HOM05D000048 ORTHO05D000445 1.1e-10 72.0 43 88.4
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.0e-07 61.2 53 43.4
QL02p035687 Quercus lobata HOM05D000080 ORTHO05D000053 4.9e-06 56.6 32 84.4


User provided reference genes

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