Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 1.1e-223 779.6 390 100.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 4.9e-46 189.5 382 39.3
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 4.7e-41 172.9 380 35.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 2.0e-39 167.5 400 34.0
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.8e-37 161.0 262 42.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 5.4e-37 159.5 380 33.9
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 1.9e-29 134.4 135 54.8
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 9.2e-29 132.1 183 43.2
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 9.2e-29 132.1 79 82.3
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 7.8e-28 129.0 236 38.1
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 2.3e-27 127.5 225 40.0
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 8.6e-27 125.6 346 32.9
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 7.3e-26 122.5 367 30.0
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 7.3e-26 122.5 367 30.0
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.2e-25 121.7 221 38.5
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 2.8e-25 120.6 260 33.8
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 2.8e-25 120.6 223 38.1
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 2.8e-25 120.6 216 40.3
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.2e-25 119.4 217 39.6
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 6.2e-25 119.4 217 39.6
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 8.1e-25 119.0 224 35.3
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.4e-24 118.2 367 30.8
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.4e-24 118.2 246 36.2
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.8e-24 117.9 228 36.0
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.8e-24 117.9 224 36.2
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 1.8e-24 117.9 67 91.0
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.8e-24 117.9 378 30.4
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.3e-24 117.5 219 37.4
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.3e-24 117.5 217 39.6
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 4.0e-24 116.7 351 30.2
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 4.0e-24 116.7 359 30.4
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 4.0e-24 116.7 380 30.3
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.8e-24 115.9 361 30.5
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.5e-23 114.8 208 36.5
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.0e-23 114.4 374 29.4
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.0e-23 114.4 366 28.7
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.0e-23 114.4 218 37.6
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 2.0e-23 114.4 219 37.4
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 2.6e-23 114.0 228 34.2
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 2.6e-23 114.0 222 35.1
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 4.4e-23 113.2 358 30.7
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 4.4e-23 113.2 219 36.1
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 5.8e-23 112.8 378 30.2
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 7.5e-23 112.5 59 88.1
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 9.8e-23 112.1 221 35.3
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.3e-22 111.7 217 37.3
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.7e-22 111.3 357 30.5
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.7e-22 110.2 222 36.9
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 3.7e-22 110.2 218 36.2
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.7e-22 110.2 227 35.2
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 3.7e-22 110.2 365 29.0
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 6.4e-22 109.4 217 37.3
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 6.4e-22 109.4 218 35.3
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-21 108.6 227 34.4
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 1.1e-21 108.6 77 66.2
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.4e-21 108.2 365 28.8
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.9e-21 107.8 225 34.2
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.9e-21 107.8 378 28.6
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.9e-21 107.8 265 31.3
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.9e-21 107.8 246 35.4
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.4e-21 107.5 369 29.8
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 2.4e-21 107.5 365 28.8
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 2.4e-21 107.5 223 35.4
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 3.2e-21 107.1 220 36.4
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.2e-21 107.1 220 36.4
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.2e-21 107.1 220 36.4
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 4.1e-21 106.7 220 35.0
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 5.4e-21 106.3 221 33.9
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 5.4e-21 106.3 173 37.0
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 7.1e-21 105.9 219 34.2
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 7.1e-21 105.9 367 27.2
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.2e-20 105.1 160 40.0
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 2.1e-20 104.4 226 35.8
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.1e-20 104.4 207 34.3
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 2.7e-20 104.0 216 34.7
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 2.7e-20 104.0 80 63.8
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 3.5e-20 103.6 227 33.0
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 4.6e-20 103.2 371 28.6
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.6e-20 103.2 369 25.7
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 4.6e-20 103.2 371 27.5
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 6.0e-20 102.8 217 34.6
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 7.8e-20 102.4 218 34.4
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.0e-19 102.1 77 61.0
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.7e-19 101.3 217 34.6
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.7e-19 101.3 217 34.6
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.7e-19 101.3 224 33.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.3e-19 100.9 365 27.9
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.3e-19 100.9 365 27.7
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 3.0e-19 100.5 220 34.1
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 3.9e-19 100.1 361 26.3
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 3.9e-19 100.1 361 26.3
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 5.1e-19 99.8 331 30.2
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 1.1e-18 98.6 273 29.3
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.9e-18 97.8 84 57.1
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 2.5e-18 97.4 361 26.3
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 2.5e-18 97.4 227 32.2
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 2.5e-18 97.4 365 29.0
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 3.3e-18 97.1 328 28.4
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 3.3e-18 97.1 158 38.0
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 3.3e-18 97.1 242 32.6
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.3e-18 97.1 355 27.9
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.6e-18 96.3 184 37.0
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 7.3e-18 95.9 239 30.5
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.3e-18 95.9 216 31.9
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 9.5e-18 95.5 362 27.1
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 9.5e-18 95.5 392 26.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.2e-17 95.1 185 35.7
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 2.1e-17 94.4 77 57.1
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 2.1e-17 94.4 209 33.5
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.8e-17 94.0 333 27.3
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.8e-17 94.0 77 55.8
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 2.8e-17 94.0 378 26.2
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 3.6e-17 93.6 372 25.8
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.6e-17 93.6 79 59.5
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 4.7e-17 93.2 78 55.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 4.7e-17 93.2 158 38.0
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 4.7e-17 93.2 224 30.8
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 6.2e-17 92.8 78 55.1
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.1e-16 92.0 77 57.1
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.3e-16 90.9 73 60.3
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.1e-16 90.5 78 57.7
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 6.8e-16 89.4 202 35.1
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.2e-15 88.6 73 57.5
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 1.2e-15 88.6 312 28.5
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 1.5e-15 88.2 352 27.8
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 2.0e-15 87.8 220 31.8
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 5.8e-15 86.3 72 58.3
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 5.8e-15 86.3 223 29.1
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 7.6e-15 85.9 222 33.8
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 9.9e-15 85.5 217 30.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.3e-14 85.1 77 51.9
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.7e-14 84.7 83 53.0
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.8e-14 83.6 83 56.6
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 6.4e-14 82.8 78 55.1
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 8.4e-14 82.4 78 51.3
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 5.4e-13 79.7 225 32.9
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 2.1e-12 77.8 369 25.5
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.7e-12 77.4 165 32.1
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.8e-12 75.9 72 55.6
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 1.3e-11 75.1 157 32.5
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.2e-07 62.0 231 29.0
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.4e-07 60.5 364 22.8
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 4.9e-06 56.6 72 40.3


User provided reference genes

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