Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p004537 Quercus lobata HOM05D005441 ORTHO05D006879 6.9e-98 360.5 170 100.0
QL07p005267 Quercus lobata HOM05D005441 ORTHO05D006879 8.2e-91 337.0 166 95.8
QL05p004486 Quercus lobata HOM05D005441 ORTHO05D006879 5.5e-87 324.3 166 92.8
QL07p005282 Quercus lobata HOM05D005441 ORTHO05D006879 3.0e-85 318.5 166 89.2
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 2.0e-84 315.8 166 88.6
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 1.3e-80 303.1 167 83.8
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 1.1e-79 300.1 175 83.4
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 2.7e-78 295.4 175 82.3
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 8.0e-78 293.9 167 80.8
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 8.2e-75 283.9 168 78.6
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 2.0e-73 279.3 167 74.9
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 1.7e-72 276.2 168 76.8
TAR369G0103 Trochodendron aralioides HOM05D005441 ORTHO05D006879 2.9e-72 275.4 167 74.9
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 8.5e-72 273.9 167 73.7
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 8.5e-72 273.9 166 75.9
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.9e-71 272.7 167 74.3
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 5.5e-71 271.2 167 73.1
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 9.4e-71 270.4 167 72.5
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 2.1e-70 269.2 167 71.9
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 2.1e-70 269.2 155 78.1
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 2.1e-70 269.2 167 73.7
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 2.7e-70 268.9 167 71.9
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 5.2e-69 264.6 167 74.3
Gorai.006G134400 Gossypium raimondii HOM05D005441 ORTHO05D006879 8.8e-69 263.8 167 70.7
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 2.0e-68 262.7 167 70.7
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 2.6e-68 262.3 162 79.0
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 4.4e-68 261.5 166 72.9
Haze_19745 Corylus avellana HOM05D005441 ORTHO05D006879 5.7e-68 261.2 154 79.9
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 5.7e-68 261.2 167 72.5
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 7.5e-68 260.8 166 69.9
Gohir.D09G116100 Gossypium hirsutum HOM05D005441 ORTHO05D006879 9.8e-68 260.4 167 71.9
Hund05910 Selenicereus undatus HOM05D005441 ORTHO05D006879 9.8e-68 260.4 167 67.7
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 1.3e-67 260.0 167 71.3
Lj2A389T89 Lonicera japonica HOM05D005441 ORTHO05D006879 4.8e-67 258.1 167 68.9
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 4.8e-67 258.1 167 70.1
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 6.3e-67 257.7 168 72.0
TWI53G1498 Tripterygium wilfordii HOM05D005441 ORTHO05D006879 6.3e-67 257.7 166 71.1
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 6.3e-67 257.7 167 69.5
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 8.3e-67 257.3 166 73.5
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 1.1e-66 256.9 167 70.1
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 1.4e-66 256.5 168 72.0
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 1.4e-66 256.5 166 71.7
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 3.1e-66 255.4 169 70.4
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 5.4e-66 254.6 167 70.1
Phvul.007G249800 Phaseolus vulgaris HOM05D005441 ORTHO05D006879 5.4e-66 254.6 166 71.1
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 7.0e-66 254.2 167 70.1
COL.COLO4_21308 Corchorus olitorius HOM05D005441 ORTHO05D006879 9.1e-66 253.8 156 70.5
Oeu006920.1 Olea europaea HOM05D005441 ORTHO05D006879 3.5e-65 251.9 167 68.3
MD12G1085300 Malus domestica HOM05D005441 ORTHO05D006879 7.7e-65 250.8 167 70.1
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 1.3e-64 250.0 167 69.5
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 5.0e-64 248.1 167 67.1
arahy.Tifrunner.gnm1.ann1.L13VJ0 Arachis hypogaea HOM05D005441 ORTHO05D006879 6.5e-64 247.7 167 69.5
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 6.5e-64 247.7 167 65.3
Rhsim03G0030500 Rhododendron simsii HOM05D005441 ORTHO05D006879 8.5e-64 247.3 167 66.5
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 1.1e-63 246.9 167 64.1
Aqoxy2G00259 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 2.5e-63 245.7 167 66.5
AUR62024526 Chenopodium quinoa HOM05D005441 ORTHO05D006879 3.2e-63 245.4 167 67.7
Eucgr.A02300 Eucalyptus grandis HOM05D005441 ORTHO05D006879 3.2e-63 245.4 167 67.7
Solyc04g016490.4 Solanum lycopersicum HOM05D005441 ORTHO05D006879 4.2e-63 245.0 170 65.9
Sopen04g008570 Solanum pennellii HOM05D005441 ORTHO05D006879 9.5e-63 243.8 170 65.3
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 1.2e-62 243.4 168 67.9
Hund19127 Selenicereus undatus HOM05D005441 ORTHO05D006879 1.6e-62 243.0 167 66.5
Peaxi162Scf00130g00934 Petunia axillaris HOM05D005441 ORTHO05D006879 4.7e-62 241.5 169 66.3
VMungo0720G1530 Vigna mungo HOM05D005441 ORTHO05D006879 8.0e-62 240.7 166 65.7
EL10Ac6g13153 Beta vulgaris HOM05D005441 ORTHO05D006879 1.0e-61 240.4 167 64.7
Sc19g0008470 Simmondsia chinensis HOM05D005441 ORTHO05D006879 1.0e-61 240.4 167 65.9
HanXRQChr14g0444951 Helianthus annuus HOM05D005441 ORTHO05D006879 1.8e-61 239.6 167 63.5
THA.LOC104826947 Tarenaya hassleriana HOM05D005441 ORTHO05D006879 2.3e-61 239.2 170 64.1
SalBow6G3742 Salvia bowleyana HOM05D005441 ORTHO05D006879 4.0e-61 238.4 165 63.6
PGSC0003DMG400012721 Solanum tuberosum HOM05D005441 ORTHO05D006879 6.8e-61 237.7 188 60.1
Nitab4.5_0001618g0230 Nicotiana tabacum HOM05D005441 ORTHO05D006879 8.8e-61 237.3 169 64.5
Sed0017425 Sechium edule HOM05D005441 ORTHO05D006879 2.6e-60 235.7 168 64.9
EL10Ac3g07155 Beta vulgaris HOM05D005441 ORTHO05D006879 3.4e-60 235.3 168 65.5
CAN.G1237.6 Capsicum annuum HOM05D005441 ORTHO05D006879 3.4e-60 235.3 168 65.5
AUR62026118 Chenopodium quinoa HOM05D005441 ORTHO05D006879 4.4e-60 235.0 167 65.9
AUR62028834 Chenopodium quinoa HOM05D005441 ORTHO05D006879 4.4e-60 235.0 167 63.5
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 7.5e-60 234.2 167 63.5
Lalb_Chr02g0156401 Lupinus albus HOM05D005441 ORTHO05D006879 7.5e-60 234.2 167 65.3
Ca_14293_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 2.2e-59 232.6 154 69.5
MSTRG.19833 Avicennia marina HOM05D005441 ORTHO05D006879 3.7e-59 231.9 167 63.5
Lsat_1_v5_gn_2_65661 Lactuca sativa HOM05D005441 ORTHO05D006879 3.7e-59 231.9 165 63.6
HPP92_014156 Vanilla planifolia HOM05D005441 ORTHO05D006879 6.3e-59 231.1 167 63.5
HPP92_014176 Vanilla planifolia HOM05D005441 ORTHO05D006879 6.3e-59 231.1 167 63.5
ECA238G2248 Erigeron canadensis HOM05D005441 ORTHO05D006879 8.3e-59 230.7 166 61.4
PSO210G6175 Papaver somniferum HOM05D005441 ORTHO05D006879 3.5e-57 225.3 169 66.9
Psat6g118360 Pisum sativum HOM05D005441 ORTHO05D006879 3.5e-57 225.3 167 64.1
HanXRQChr14g0444961 Helianthus annuus HOM05D005441 ORTHO05D006879 5.9e-57 224.6 167 60.5
Aa31LG3G2690 Aethionema arabicum HOM05D005441 ORTHO05D006879 1.3e-56 223.4 169 62.7
A05p38950 Brassica napus HOM05D005441 ORTHO05D006879 1.7e-56 223.0 168 60.7
BraA05t22686Z Brassica rapa HOM05D005441 ORTHO05D006879 1.7e-56 223.0 168 60.7
PSO832G1452 Papaver somniferum HOM05D005441 ORTHO05D006879 1.7e-56 223.0 169 65.1
Ah.04g151360 Amaranthus hybridus HOM05D005441 ORTHO05D006879 2.3e-56 222.6 166 60.2
Aqoxy3G01901 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 2.3e-56 222.6 152 66.4
Sp3g08430 Schrenkiella parvula HOM05D005441 ORTHO05D006879 1.1e-55 220.3 168 58.9
Os01g0941800 Oryza sativa ssp. japonica HOM05D005441 ORTHO05D006879 3.3e-55 218.8 169 60.9
AL3G21480 Arabidopsis lyrata HOM05D005441 ORTHO05D006879 5.6e-55 218.0 168 60.7
MELO3C009811.2 Cucumis melo HOM05D005441 ORTHO05D006879 5.6e-55 218.0 173 60.1
AT3G10150 Arabidopsis thaliana HOM05D005441 ORTHO05D006879 9.5e-55 217.2 168 61.3
C05p57970 Brassica napus HOM05D005441 ORTHO05D006879 1.2e-54 216.9 167 61.1
BcaNung05908 Brassica carinata HOM05D005441 ORTHO05D006879 2.8e-54 215.7 168 59.5
BolC5t34452H Brassica oleracea HOM05D005441 ORTHO05D006879 2.8e-54 215.7 168 59.5
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 1.0e-53 213.8 173 58.4
Nitab4.5_0000826g0160 Nicotiana tabacum HOM05D005441 ORTHO05D006879 3.0e-53 212.2 157 64.3
BcaNung05909 Brassica carinata HOM05D005441 ORTHO05D006879 2.0e-52 209.5 171 58.5
Carub.0003s0930 Capsella rubella HOM05D005441 ORTHO05D006879 2.0e-52 209.5 166 59.0
ATR0721G128 Amborella trichopoda HOM05D005441 ORTHO05D006879 5.4e-50 201.4 170 52.9
Thhalv10020902m.g Eutrema salsugineum HOM05D005441 ORTHO05D006879 9.2e-50 200.7 165 58.2
SEGI_17185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 2.3e-48 196.1 168 52.4
ClCG10G015640 Citrullus lanatus HOM05D005441 ORTHO05D006879 6.8e-45 184.5 147 61.9
Zm00001eb141530 Zea mays HOM05D005441 ORTHO05D006879 1.5e-44 183.3 174 50.0
QL07p005351 Quercus lobata HOM05D005441 ORTHO05D006879 7.5e-44 181.0 166 58.4
SMO147G0304 Selaginella moellendorffii HOM05D005441 ORTHO05D006879 5.6e-39 164.9 166 47.0
SalBow6G7142 Salvia bowleyana HOM05D005441 ORTHO05D006879 2.4e-34 149.4 109 62.4
Mapoly0006s0192 Marchantia polymorpha HOM05D005441 ORTHO05D006879 1.6e-33 146.7 167 47.3
FAN09G0607 Fragaria x ananassa HOM05D005441 ORTHO05D006879 3.9e-32 142.1 93 72.0
Pp3c1_39520 Physcomitrium patens HOM05D005441 ORTHO05D006879 1.9e-31 139.8 169 45.6
QL10p045538 Quercus lobata HOM05D005441 ORTHO05D006879 1.2e-30 137.1 75 81.3
CiPaw.09G041500 Carya illinoinensis HOM05D005441 ORTHO05D006879 1.2e-28 130.6 94 67.0
SalBow6G6697 Salvia bowleyana HOM05D005441 ORTHO05D006879 3.4e-28 129.0 94 60.6
Aqoxy1G03762 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.9e-26 123.2 84 64.3
SEGI_23443 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 3.0e-24 115.9 91 57.1
SEGI_29185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 3.0e-24 115.9 91 57.1
unitig_22.g6054 Utricularia gibba HOM05D001412 ORTHO05D002473 6.6e-24 114.8 124 46.8
Aqoxy5G02961 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.1e-23 114.0 75 66.7
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 3.3e-23 112.5 68 69.1
SEGI_21032 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 5.2e-21 105.1 141 41.1
CARHR084630 Cardamine hirsuta HOM05D005441 ORTHO05D006879 3.4e-20 102.4 83 63.9
SGA_v2.0_scaffold105G30361 Striga asiatica HOM05D005441 ORTHO05D006879 1.9e-18 96.7 56 71.4
Zm00001eb070880 Zea mays HOM05D005441 ORTHO05D006879 3.6e-14 82.4 89 48.3
FAN09G3009 Fragaria x ananassa HOM05D005441 ORTHO05D006879 6.2e-14 81.6 70 54.3
Zm00001eb311520 Zea mays HOM05D005441 ORTHO05D006879 6.2e-14 81.6 77 49.4
Zm00001eb249080 Zea mays HOM05D000194 ORTHO05D000069 2.1e-09 66.6 78 46.2
TPR.G29527 Trifolium pratense HOM05D005441 ORTHO05D006879 6.2e-06 55.1 33 72.7


User provided reference genes

Program Settings