Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p004175 Quercus lobata HOM05D001216 ORTHO05D027542 2.5e-72 275.4 143 100.0
QL05p004201 Quercus lobata HOM05D001216 ORTHO05D003822 1.1e-64 250.0 136 94.9
Cfa003528 Carpinus fangiana HOM05D001216 ORTHO05D003822 4.9e-28 128.3 149 61.1
Haze_16037 Corylus avellana HOM05D001216 ORTHO05D003822 5.4e-27 124.8 149 59.7
CiPaw.02G135500 Carya illinoinensis HOM05D001216 ORTHO05D003822 4.6e-26 121.7 149 59.1
CiPaw.01G218200 Carya illinoinensis HOM05D001216 ORTHO05D003822 1.0e-25 120.6 149 58.4
Cpa.g.sc589.3 Carica papaya HOM05D001216 ORTHO05D003822 8.6e-17 90.9 127 48.8
Ciclev10024989m.g Citrus clementina HOM05D001216 ORTHO05D003822 3.3e-16 89.0 137 48.9
Lj3g0021321 Lotus japonicus HOM05D001216 ORTHO05D003822 9.5e-16 87.4 130 48.5
PGR102G0760 Punica granatum HOM05D001216 ORTHO05D003822 4.7e-15 85.1 139 48.2
ClCG07G014120 Citrullus lanatus HOM05D001216 ORTHO05D003822 6.2e-15 84.7 126 49.2
Aqoxy7G04059 Aquilegia oxysepala HOM05D001216 ORTHO05D003822 1.1e-14 84.0 110 52.7
Glyma.07G039600 Glycine max HOM05D001216 ORTHO05D003822 1.8e-14 83.2 129 48.8
VMungo0331G0428 Vigna mungo HOM05D001216 ORTHO05D003822 3.1e-14 82.4 129 48.1
CsaV3_3G031310 Cucumis sativus L. HOM05D001216 ORTHO05D003822 4.0e-14 82.0 133 47.4
CsaV3_UNG227950 Cucumis sativus L. HOM05D001216 ORTHO05D003822 4.0e-14 82.0 133 47.4
Glyma.16G008400 Glycine max HOM05D001216 ORTHO05D003822 1.2e-13 80.5 126 49.2
Phvul.010G129100 Phaseolus vulgaris HOM05D001216 ORTHO05D003822 1.5e-13 80.1 123 48.0
MELO3C025801.2 Cucumis melo HOM05D001216 ORTHO05D003822 2.6e-13 79.3 133 45.9
THA.LOC104810369 Tarenaya hassleriana HOM05D001216 ORTHO05D003822 3.4e-13 79.0 130 44.6
MD09G1181600 Malus domestica HOM05D001216 ORTHO05D003822 5.8e-13 78.2 130 49.2
COL.COLO4_30748 Corchorus olitorius HOM05D001216 ORTHO05D003822 7.5e-13 77.8 116 50.0
MD17G1168000 Malus domestica HOM05D001216 ORTHO05D003822 9.9e-13 77.4 130 47.7
Manes.11G019500 Manihot esculenta HOM05D001216 ORTHO05D003822 1.7e-12 76.6 125 47.2
Prupe.3G039700 Prunus persica HOM05D001216 ORTHO05D003822 1.7e-12 76.6 126 46.8
arahy.Tifrunner.gnm1.ann1.SCHH8V Arachis hypogaea HOM05D001216 ORTHO05D003822 2.2e-12 76.3 121 46.3
arahy.Tifrunner.gnm1.ann1.SZLU9V Arachis hypogaea HOM05D001216 ORTHO05D003822 2.2e-12 76.3 121 46.3
ClCG09G001000 Citrullus lanatus HOM05D001216 ORTHO05D003822 2.9e-12 75.9 134 44.8
CsaV3_7G034440 Cucumis sativus L. HOM05D001216 ORTHO05D003822 2.9e-12 75.9 135 46.7
TAR383G0104 Trochodendron aralioides HOM05D001216 ORTHO05D003822 2.9e-12 75.9 119 46.2
MELO3C024351.2 Cucumis melo HOM05D001216 ORTHO05D003822 3.7e-12 75.5 134 44.8
Dinv37864 Davidia involucrata HOM05D001216 ORTHO05D003822 4.9e-12 75.1 119 48.7
Nn8g38635 Nelumbo nucifera HOM05D001216 ORTHO05D003822 4.9e-12 75.1 113 48.7
Sed0012851 Sechium edule HOM05D001216 ORTHO05D003822 8.3e-12 74.3 135 42.2
AT3G14050 Arabidopsis thaliana HOM05D001216 ORTHO05D003822 1.1e-11 73.9 146 41.8
Thecc.06G121200 Theobroma cacao HOM05D001216 ORTHO05D003822 1.1e-11 73.9 127 47.2
Sed0005494 Sechium edule HOM05D001216 ORTHO05D003822 1.4e-11 73.6 147 46.3
Manes.04G145500 Manihot esculenta HOM05D001216 ORTHO05D003822 1.9e-11 73.2 124 45.2
Potri.001G168200 Populus trichocarpa HOM05D001216 ORTHO05D003822 1.9e-11 73.2 125 44.8
VMungo1309G2120 Vigna mungo HOM05D001216 ORTHO05D027542 1.9e-11 73.2 104 49.0
Duzib160G0167 Durio zibethinus HOM05D001216 ORTHO05D003822 2.4e-11 72.8 116 48.3
Dinv20429 Davidia involucrata HOM05D001216 ORTHO05D003822 3.2e-11 72.4 115 47.8
HPP92_016606 Vanilla planifolia HOM05D001216 ORTHO05D003822 7.1e-11 71.2 136 40.4
Medtr8g020880 Medicago truncatula HOM05D001216 ORTHO05D003822 9.2e-11 70.9 123 48.0
Sabra03G0038600 Salix brachista HOM05D001216 ORTHO05D003822 9.2e-11 70.9 126 41.3
Sed0005723 Sechium edule HOM05D001216 ORTHO05D003822 9.2e-11 70.9 133 45.9
AL3G26250 Arabidopsis lyrata HOM05D001216 ORTHO05D003822 1.6e-10 70.1 142 43.0
Potri.003G066000 Populus trichocarpa HOM05D001216 ORTHO05D003822 3.5e-10 68.9 126 41.3
THA.LOC104815622 Tarenaya hassleriana HOM05D001216 ORTHO05D003822 3.5e-10 68.9 140 42.9
Thhalv10020161m.g Eutrema salsugineum HOM05D001216 ORTHO05D003822 4.6e-10 68.6 143 43.4
RcHm_v2.0_Chr2g0145751 Rosa chinensis HOM05D001216 ORTHO05D003822 4.6e-10 68.6 134 43.3
TWI31G1175 Tripterygium wilfordii HOM05D001216 ORTHO05D003822 4.6e-10 68.6 125 46.4
Atru.chr1.3998 Acer truncatum HOM05D001216 ORTHO05D003822 6.0e-10 68.2 121 50.4
Gohir.D10G055500 Gossypium hirsutum HOM05D001216 ORTHO05D003822 6.0e-10 68.2 114 45.6
Gorai.011G059200 Gossypium raimondii HOM05D001216 ORTHO05D003822 6.0e-10 68.2 114 45.6
Sp3g12290 Schrenkiella parvula HOM05D001216 ORTHO05D003822 6.0e-10 68.2 141 41.1
Actinidia26025 Actinidia chinensis HOM05D001216 ORTHO05D003822 1.0e-09 67.4 146 41.8
Gohir.A10G053700 Gossypium hirsutum HOM05D001216 ORTHO05D003822 1.7e-09 66.6 108 45.4
Gohir.D05G142300 Gossypium hirsutum HOM05D001216 ORTHO05D003822 1.7e-09 66.6 140 41.4
Gorai.009G146300 Gossypium raimondii HOM05D001216 ORTHO05D003822 1.7e-09 66.6 140 41.4
Eucgr.F04408 Eucalyptus grandis HOM05D001216 ORTHO05D003822 2.3e-09 66.2 120 43.3
EL10Ac7g16415 Beta vulgaris HOM05D001216 ORTHO05D003822 3.0e-09 65.9 108 46.3
CDE06G0396 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 3.0e-09 65.9 130 40.0
FvH4_6g34880 Fragaria vesca HOM05D001216 ORTHO05D003822 3.0e-09 65.9 123 46.3
Carub.0003s1364 Capsella rubella HOM05D001216 ORTHO05D003822 3.9e-09 65.5 118 43.2
Ca_23389_v3 Cicer arietinum L. HOM05D001216 ORTHO05D003822 3.9e-09 65.5 137 43.8
FAN02G1741 Fragaria x ananassa HOM05D001216 ORTHO05D003822 3.9e-09 65.5 123 48.8
FAN14G5102 Fragaria x ananassa HOM05D001216 ORTHO05D003822 3.9e-09 65.5 123 46.3
Gohir.A05G140000 Gossypium hirsutum HOM05D001216 ORTHO05D003822 3.9e-09 65.5 140 40.7
Sabra01G0142400 Salix brachista HOM05D001216 ORTHO05D003822 3.9e-09 65.5 125 42.4
FAN05G2062 Fragaria x ananassa HOM05D001216 ORTHO05D003822 5.1e-09 65.1 122 45.1
Sc15g0000390 Simmondsia chinensis HOM05D001216 ORTHO05D003822 5.1e-09 65.1 118 41.5
Aa31LG10G1280 Aethionema arabicum HOM05D001216 ORTHO05D003822 6.6e-09 64.7 135 43.0
CARHR088880 Cardamine hirsuta HOM05D001216 ORTHO05D003822 6.6e-09 64.7 145 42.8
CANSAT13G0001 Cannabis sativa HOM05D001216 ORTHO05D003822 8.6e-09 64.3 152 44.7
CANSAT56G1565 Cannabis sativa HOM05D001216 ORTHO05D003822 8.6e-09 64.3 152 44.7
Eucgr.J02809 Eucalyptus grandis HOM05D001216 ORTHO05D003822 8.6e-09 64.3 125 43.2
FAN09G3390 Fragaria x ananassa HOM05D001216 ORTHO05D003822 2.5e-08 62.8 123 47.2
CAN.G668.43 Capsicum annuum HOM05D001216 ORTHO05D003822 3.3e-08 62.4 125 43.2
Lj9A524T49 Lonicera japonica HOM05D001216 ORTHO05D003822 4.3e-08 62.0 116 43.1
PGR119G1618 Punica granatum HOM05D001216 ORTHO05D003822 4.3e-08 62.0 136 39.7
PSO724G0441 Papaver somniferum HOM05D001216 ORTHO05D003822 1.2e-07 60.5 114 44.7
Aa31LG8G1240 Aethionema arabicum HOM05D001216 ORTHO05D003822 1.6e-07 60.1 110 43.6
TPR.G13810 Trifolium pratense HOM05D001216 ORTHO05D003822 1.6e-07 60.1 135 43.0
DCAR_016123 Daucus carota HOM05D001216 ORTHO05D003822 2.8e-07 59.3 120 39.2
Cc04_g01270 Coffea canephora HOM05D001216 ORTHO05D003822 3.6e-07 58.9 154 38.3
Lj5A36T82 Lonicera japonica HOM05D001216 ORTHO05D003822 3.6e-07 58.9 114 41.2
Actinidia32192 Actinidia chinensis HOM05D001216 ORTHO05D003822 4.7e-07 58.5 136 40.4
Ah.08g216840 Amaranthus hybridus HOM05D001216 ORTHO05D003822 4.7e-07 58.5 110 44.5
Hma1.2p1_0686F.1_g203400 Hydrangea macrophylla HOM05D001216 ORTHO05D003822 6.2e-07 58.2 140 39.3
Nitab4.5_0004422g0050 Nicotiana tabacum HOM05D001216 ORTHO05D003822 8.1e-07 57.8 109 45.0
Hund05735 Selenicereus undatus HOM05D001216 ORTHO05D003822 8.1e-07 57.8 126 42.9
Solyc03g123370.3 Solanum lycopersicum HOM05D001216 ORTHO05D003822 8.1e-07 57.8 115 44.3
CSS0035701 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D003822 1.1e-06 57.4 113 40.7
Nitab4.5_0007255g0010 Nicotiana tabacum HOM05D001216 ORTHO05D003822 1.4e-06 57.0 111 46.8
Thhalv10011285m.g Eutrema salsugineum HOM05D001216 ORTHO05D003822 1.8e-06 56.6 119 41.2
Psat4g177600 Pisum sativum HOM05D001216 ORTHO05D003822 1.8e-06 56.6 150 40.0
ATR0598G350 Amborella trichopoda HOM05D001216 ORTHO05D003822 3.1e-06 55.8 109 42.2
CDE04G2782 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 3.1e-06 55.8 116 37.1
Hund18688 Selenicereus undatus HOM05D001216 ORTHO05D003822 3.1e-06 55.8 135 38.5
Sopen03g041150 Solanum pennellii HOM05D001216 ORTHO05D003822 3.1e-06 55.8 121 44.6
PGSC0003DMG400014030 Solanum tuberosum HOM05D001216 ORTHO05D003822 3.1e-06 55.8 121 44.6
vmacro15040 Vaccinium macrocarpon HOM05D001216 ORTHO05D003822 5.2e-06 55.1 135 40.0
BcaB06g25408 Brassica carinata HOM05D001216 ORTHO05D003822 6.8e-06 54.7 100 43.0
PSO135G0460 Papaver somniferum HOM05D001216 ORTHO05D003822 6.8e-06 54.7 113 41.6
CARHR044480 Cardamine hirsuta HOM05D001216 ORTHO05D003822 8.9e-06 54.3 119 41.2


User provided reference genes

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