Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1938.3 990 100.0
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1657.9 990 85.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1600.5 990 82.2
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1589.7 990 81.6
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1577.8 990 81.0
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1546.2 990 79.7
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1539.6 990 79.3
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1537.7 990 79.0
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1533.1 990 78.7
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1531.2 993 78.1
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1530.4 990 77.2
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1526.9 991 77.9
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1525.0 1004 77.5
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1524.2 990 78.5
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1523.8 970 79.6
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1522.3 990 77.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1519.6 992 76.9
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1518.4 991 77.4
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1515.7 990 76.4
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1514.2 991 76.5
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1513.0 991 76.4
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1511.5 993 77.2
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1510.0 990 76.9
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1508.8 991 76.9
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1505.0 980 76.6
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1504.6 990 77.3
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1503.4 980 76.1
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1501.1 990 77.1
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1500.3 990 77.4
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1498.8 991 76.5
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1490.3 990 74.9
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1489.6 991 75.1
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1488.4 1015 75.6
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1486.9 990 74.9
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1486.1 992 75.5
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1482.6 991 76.0
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1481.8 992 75.6
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1481.1 991 76.0
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1471.1 990 75.3
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1471.1 995 74.7
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1468.0 990 75.1
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1467.6 990 74.8
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1465.3 990 74.7
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1461.8 993 74.1
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1461.0 992 74.6
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1460.3 1075 69.7
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1459.9 970 76.0
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1459.1 990 73.4
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1458.7 990 74.1
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1455.7 992 74.3
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1453.0 990 74.6
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1452.2 992 73.7
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1451.8 985 73.7
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 988 72.8
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1448.7 990 74.5
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1448.0 991 72.8
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1443.3 994 73.8
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1441.4 990 72.3
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1441.0 991 72.8
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1440.6 993 74.3
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1437.2 990 72.2
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1434.1 992 73.7
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1434.1 993 73.4
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 964 74.8
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1430.2 991 74.3
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1427.9 997 74.6
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1427.2 990 74.0
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1426.4 990 71.9
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1420.6 990 71.5
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1414.4 995 72.0
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1409.4 993 72.7
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1406.7 961 72.4
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1405.6 919 77.9
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1403.3 990 71.1
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1400.2 961 74.1
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1399.8 990 71.1
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 963 73.8
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1397.9 993 71.3
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1395.2 990 73.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1391.7 895 77.4
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1390.9 992 72.4
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1390.2 993 71.4
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1387.5 990 70.6
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1369.0 995 71.3
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 993 71.0
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1363.2 992 69.6
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1362.8 1004 69.2
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 993 69.3
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1360.9 993 69.2
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1355.5 993 69.4
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1352.4 981 69.9
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1352.4 981 69.9
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1352.0 1025 69.2
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1343.2 992 69.5
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1327.0 998 68.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1317.8 990 68.9
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1315.8 950 71.7
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1294.3 964 68.9
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1254.6 972 65.4
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1226.1 859 73.6
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1213.0 912 69.6
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1186.4 991 60.4
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1165.6 998 62.3
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1082.0 723 76.8
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.1e-301 1040.0 912 61.7
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.5e-298 1029.6 992 54.3
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 9.1e-291 1003.8 1002 52.0
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 8.0e-287 990.7 1000 53.1
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 8.2e-284 980.7 1000 50.9
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.4e-283 979.2 1000 52.6
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 8.8e-278 960.7 611 78.9
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.1e-275 953.7 1001 51.4
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.2e-273 946.0 598 79.1
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.9e-264 916.4 841 58.3
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 8.0e-263 911.0 741 63.3
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.3e-260 903.7 608 75.2
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 4.1e-251 872.1 984 47.2
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.5e-245 853.6 808 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 4.8e-215 752.3 912 44.3
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 1.8e-209 733.8 1082 38.4
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 1.7e-183 647.5 428 76.4
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 8.6e-148 528.9 315 82.2
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 1.6e-146 524.6 303 84.5
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 6.1e-146 522.7 356 73.0
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.7e-124 451.4 1190 29.5
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.2e-87 328.2 274 60.6
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.2e-87 328.2 274 60.6
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 4.1e-73 280.8 1082 26.4
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.8e-55 221.1 240 48.3
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.8e-44 185.7 923 22.9
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.5e-30 138.7 122 63.1
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.0e-28 133.3 145 50.3
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.2e-24 119.8 144 47.9
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 2.0e-24 119.0 110 53.6
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 5.0e-23 114.4 85 67.1
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.8e-16 90.5 64 68.8


User provided reference genes

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