Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.6e-70 269.2 132 100.0
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.8e-21 106.3 85 58.8
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.0e-19 100.5 99 54.5
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.9e-18 96.3 66 66.7
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.5e-18 94.7 99 51.5
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 5.5e-18 94.7 97 48.5
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 9.4e-18 94.0 102 47.1
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.2e-17 93.6 97 52.6
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.7e-17 92.4 99 50.5
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 8.0e-17 90.9 96 52.1
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 8.0e-17 90.9 96 51.0
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.4e-16 90.1 101 47.5
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.4e-16 90.1 95 48.4
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.4e-16 90.1 96 49.0
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.8e-16 89.7 100 49.0
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.3e-16 89.4 93 48.4
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.3e-16 89.4 82 54.9
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.3e-16 89.4 100 46.0
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.0e-16 89.0 97 51.5
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.9e-16 88.6 97 47.4
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.9e-16 88.6 99 47.5
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 3.9e-16 88.6 99 47.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.2e-16 88.2 97 51.5
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 5.2e-16 88.2 95 45.3
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 5.2e-16 88.2 100 45.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 5.2e-16 88.2 102 48.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.7e-16 87.8 99 47.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 8.8e-16 87.4 100 48.0
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 8.8e-16 87.4 80 52.5
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-15 86.7 115 45.2
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.5e-15 86.7 71 53.5
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.5e-15 86.7 92 47.8
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.5e-15 86.7 96 47.9
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 2.0e-15 86.3 71 53.5
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.6e-15 85.9 96 45.8
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.6e-15 85.9 96 45.8
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.6e-15 85.9 96 49.0
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.6e-15 85.9 99 42.4
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.3e-15 85.5 80 47.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.3e-15 85.5 99 47.5
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.4e-15 85.1 99 48.5
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 5.7e-15 84.7 92 46.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 5.7e-15 84.7 71 52.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.7e-15 84.7 82 52.4
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 7.4e-15 84.3 105 46.7
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 7.4e-15 84.3 91 48.4
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 7.4e-15 84.3 101 42.6
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 9.7e-15 84.0 82 50.0
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 9.7e-15 84.0 99 46.5
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.3e-14 83.6 97 46.4
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.3e-14 83.6 94 47.9
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.3e-14 83.6 107 42.1
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.3e-14 83.6 99 48.5
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.7e-14 83.2 98 48.0
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.7e-14 83.2 93 50.5
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.2e-14 82.8 78 51.3
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.8e-14 82.4 71 49.3
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.8e-14 82.4 92 45.7
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.8e-14 82.4 97 46.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.8e-14 82.4 97 46.4
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.8e-14 82.4 97 44.3
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.8e-14 82.4 92 45.7
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.7e-14 82.0 107 41.1
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 3.7e-14 82.0 100 45.0
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 3.7e-14 82.0 81 49.4
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.8e-14 81.6 107 41.1
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 8.2e-14 80.9 97 42.3
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 8.2e-14 80.9 97 42.3
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 8.2e-14 80.9 98 48.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.1e-13 80.5 81 48.1
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.1e-13 80.5 81 48.1
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.1e-13 80.5 91 46.2
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.1e-13 80.5 71 49.3
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-13 80.1 81 46.9
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.4e-13 80.1 80 50.0
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.4e-13 80.1 87 47.1
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.8e-13 79.7 100 46.0
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 2.4e-13 79.3 99 46.5
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.4e-13 79.3 86 45.3
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 3.1e-13 79.0 87 47.1
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 4.1e-13 78.6 92 41.3
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 4.1e-13 78.6 92 41.3
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 4.1e-13 78.6 92 41.3
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 5.3e-13 78.2 80 55.0
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 5.3e-13 78.2 81 49.4
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.3e-13 78.2 92 44.6
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 7.0e-13 77.8 97 42.3
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 7.0e-13 77.8 96 41.7
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.0e-13 77.8 100 44.0
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.0e-13 77.8 99 47.5
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 9.1e-13 77.4 100 44.0
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-12 77.0 99 47.5
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.2e-12 77.0 96 42.7
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.2e-12 77.0 95 47.4
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.6e-12 76.6 97 41.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.6e-12 76.6 98 43.9
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.6e-12 76.6 98 44.9
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.0e-12 76.3 66 56.1
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.0e-12 76.3 90 45.6
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.6e-12 75.9 99 46.5
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.5e-12 75.5 83 47.0
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 3.5e-12 75.5 63 57.1
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-12 75.1 71 47.9
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 4.5e-12 75.1 82 52.4
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 7.7e-12 74.3 71 49.3
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 7.7e-12 74.3 96 44.8
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.0e-11 73.9 71 45.1
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.0e-11 73.9 71 47.9
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.0e-11 73.9 71 47.9
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.2e-11 72.8 79 53.2
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 2.2e-11 72.8 90 42.2
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.2e-11 72.8 82 47.6
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 2.2e-11 72.8 81 50.6
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.9e-11 72.4 94 41.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.9e-11 72.4 75 50.7
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 2.9e-11 72.4 107 38.3
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.9e-11 72.4 92 44.6
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.0e-11 71.6 100 42.0
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 8.5e-11 70.9 68 50.0
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 8.5e-11 70.9 78 48.7
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 8.5e-11 70.9 98 42.9
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.5e-10 70.1 86 46.5
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.9e-10 69.7 78 44.9
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.5e-10 69.3 97 42.3
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 2.5e-10 69.3 97 42.3
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 3.2e-10 68.9 87 40.2
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 9.4e-10 67.4 76 47.4
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.6e-09 66.6 58 56.9
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.1e-09 66.2 76 48.7
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.7e-09 65.9 81 46.9
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.6e-09 65.5 80 41.2
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 6.1e-09 64.7 69 46.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.4e-08 63.5 68 50.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.8e-08 63.2 69 52.2
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 1.8e-08 63.2 70 42.9
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.0e-08 62.0 68 51.5
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 4.0e-08 62.0 64 50.0
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 6.7e-08 61.2 86 39.5
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 8.8e-08 60.8 56 46.4
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.5e-07 60.1 69 55.1
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.5e-07 60.1 70 52.9
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.5e-07 60.1 97 32.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.0e-07 59.7 101 35.6
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.3e-07 58.9 100 38.0
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 7.5e-07 57.8 92 40.2
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 9.7e-07 57.4 100 35.0
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 2.2e-06 56.2 47 57.4
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.7e-06 55.5 41 61.0
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 4.8e-06 55.1 61 41.0
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 6.3e-06 54.7 105 35.2
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 8.2e-06 54.3 71 47.9
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 8.2e-06 54.3 86 36.0


User provided reference genes

Program Settings