Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 1.9e-104 382.5 188 100.0
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 3.4e-45 185.7 96 94.8
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 1.4e-43 180.3 106 76.4
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 1.4e-38 163.7 96 78.1
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 1.8e-38 163.3 106 73.6
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 1.2e-37 160.6 106 67.9
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 2.9e-36 156.0 95 77.9
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 2.9e-36 156.0 98 73.5
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 6.4e-36 154.8 106 68.9
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 6.4e-36 154.8 95 74.7
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 6.4e-36 154.8 102 74.5
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 6.4e-36 154.8 95 74.7
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 8.3e-36 154.5 106 68.9
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 1.1e-35 154.1 93 73.1
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 1.4e-35 153.7 103 68.9
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 1.4e-35 153.7 103 69.9
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 1.9e-35 153.3 93 73.1
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 1.9e-35 153.3 96 74.0
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 1.9e-35 153.3 96 72.9
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 2.4e-35 152.9 96 71.9
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 2.4e-35 152.9 95 76.8
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 2.4e-35 152.9 95 71.6
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 3.2e-35 152.5 100 68.0
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 4.1e-35 152.1 97 76.3
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 5.4e-35 151.8 95 74.7
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 5.4e-35 151.8 96 74.0
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 5.4e-35 151.8 96 70.8
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 7.1e-35 151.4 96 74.0
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 9.2e-35 151.0 95 71.6
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 9.2e-35 151.0 96 69.8
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 2.1e-34 149.8 96 74.0
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 2.1e-34 149.8 96 72.9
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 2.7e-34 149.4 96 71.9
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 3.5e-34 149.1 95 70.5
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 3.5e-34 149.1 94 73.4
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 3.5e-34 149.1 95 70.5
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 3.5e-34 149.1 93 72.0
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 3.5e-34 149.1 96 69.8
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 4.6e-34 148.7 96 71.9
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 4.6e-34 148.7 103 66.0
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 6.0e-34 148.3 95 70.5
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 7.8e-34 147.9 94 74.5
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 7.8e-34 147.9 95 71.6
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 7.8e-34 147.9 96 68.8
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 7.8e-34 147.9 94 74.5
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 7.8e-34 147.9 95 67.4
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 1.0e-33 147.5 93 74.2
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 1.0e-33 147.5 96 74.0
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.3e-33 147.1 93 69.9
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 1.3e-33 147.1 93 71.0
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 1.3e-33 147.1 96 72.9
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 1.7e-33 146.7 103 66.0
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 3.0e-33 146.0 92 75.0
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.0e-33 146.0 95 69.5
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.0e-33 146.0 95 69.5
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 3.0e-33 146.0 95 69.5
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 3.9e-33 145.6 93 73.1
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 3.9e-33 145.6 93 73.1
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 3.9e-33 145.6 95 73.7
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 3.9e-33 145.6 107 63.6
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 5.1e-33 145.2 93 74.2
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 5.1e-33 145.2 96 66.7
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 6.6e-33 144.8 95 69.5
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 6.6e-33 144.8 96 74.0
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.1e-32 144.1 95 71.6
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 1.1e-32 144.1 96 69.8
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.1e-32 144.1 96 71.9
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 1.1e-32 144.1 96 70.8
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 1.5e-32 143.7 93 71.0
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 1.5e-32 143.7 96 72.9
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 1.5e-32 143.7 98 71.4
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 1.9e-32 143.3 93 72.0
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.9e-32 143.3 93 72.0
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.9e-32 143.3 93 72.0
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 1.9e-32 143.3 93 73.1
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 4.3e-32 142.1 93 69.9
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 4.3e-32 142.1 93 69.9
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 5.6e-32 141.7 96 71.9
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 5.6e-32 141.7 96 68.8
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 7.3e-32 141.4 103 64.1
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 7.3e-32 141.4 103 64.1
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 7.3e-32 141.4 107 61.7
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 1.2e-31 140.6 103 66.0
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 1.6e-31 140.2 106 64.2
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 3.6e-31 139.0 94 66.0
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 6.2e-31 138.3 106 61.3
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 8.1e-31 137.9 107 62.6
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 1.1e-30 137.5 94 71.3
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 1.8e-30 136.7 99 61.6
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 1.8e-30 136.7 94 64.9
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 1.8e-30 136.7 81 75.3
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 2.4e-30 136.3 96 65.6
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 2.4e-30 136.3 104 59.6
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 4.4e-29 132.1 93 64.5
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 9.9e-29 131.0 96 65.6
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 9.9e-29 131.0 93 63.4
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 2.2e-28 129.8 116 59.5
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 3.5e-26 122.5 96 59.4
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 2.2e-20 103.2 72 70.8
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 4.2e-19 99.0 53 94.3
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 4.2e-19 99.0 53 94.3
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 7.8e-18 94.7 99 44.4
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 8.1e-15 84.7 75 50.7
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 1.5e-13 80.5 47 74.5
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 3.4e-13 79.3 44 72.7
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 3.4e-13 79.3 44 79.5
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 7.6e-13 78.2 59 62.7
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 4.9e-12 75.5 42 73.8
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 1.9e-11 73.6 52 67.3
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 6.0e-10 68.6 51 58.8
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 3.9e-09 65.9 43 67.4
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 1.3e-07 60.8 92 40.2
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 1.3e-07 60.8 92 40.2
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 2.1e-07 60.1 44 56.8


User provided reference genes

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