Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p000846 Quercus lobata HOM05D007010 ORTHO05D008591 5.5e-53 211.5 179 100.0
QL05p001142 Quercus lobata HOM05D007010 ORTHO05D008591 1.8e-48 196.4 179 96.6
Haze_03853 Corylus avellana HOM05D007010 ORTHO05D008591 2.2e-30 136.3 91 75.8
Eucgr.C02362 Eucalyptus grandis HOM05D007010 ORTHO05D008591 3.1e-24 115.9 91 70.3
CsaV3_4G035530 Cucumis sativus L. HOM05D007010 ORTHO05D008591 2.6e-23 112.8 92 63.0
Ciclev10009901m.g Citrus clementina HOM05D007010 ORTHO05D008591 5.9e-23 111.7 94 62.8
Glyma.07G198700 Glycine max HOM05D007010 ORTHO05D008591 7.7e-23 111.3 98 66.3
Sed0004842 Sechium edule HOM05D007010 ORTHO05D008591 3.8e-22 109.0 92 62.0
Gohir.A06G087901 Gossypium hirsutum HOM05D007010 ORTHO05D008591 5.0e-22 108.6 96 61.5
Medtr4g088585 Medicago truncatula HOM05D007010 ORTHO05D008591 5.0e-22 108.6 93 63.4
Ca_18571_v3 Cicer arietinum L. HOM05D007010 ORTHO05D008591 4.2e-21 105.5 97 62.9
Lalb_Chr05g0218511 Lupinus albus HOM05D007010 ORTHO05D008591 5.5e-21 105.1 97 66.0
Psat7g115760 Pisum sativum HOM05D007010 ORTHO05D008591 7.2e-21 104.8 180 39.4
Lj5g0011556 Lotus japonicus HOM05D007010 ORTHO05D008591 9.4e-21 104.4 97 66.0
Thecc.09G051700 Theobroma cacao HOM05D007010 ORTHO05D008591 9.4e-21 104.4 96 60.4
Nn8g38932 Nelumbo nucifera HOM05D007010 ORTHO05D008591 6.1e-20 101.7 91 62.6
Nn8g38936 Nelumbo nucifera HOM05D007010 ORTHO05D008591 6.1e-20 101.7 91 62.6
Gohir.D06G088700 Gossypium hirsutum HOM05D007010 ORTHO05D008591 8.0e-20 101.3 96 58.3
Phvul.002G230000 Phaseolus vulgaris HOM05D007010 ORTHO05D008591 8.0e-20 101.3 98 60.2
CiPaw.15G041400 Carya illinoinensis HOM05D007010 ORTHO05D008591 1.0e-19 100.9 81 66.7
TPR.G16317 Trifolium pratense HOM05D007010 ORTHO05D008591 2.3e-19 99.8 96 61.5
VMungo0251G3434 Vigna mungo HOM05D007010 ORTHO05D008591 5.2e-19 98.6 101 57.4
ClCG05G017750 Citrullus lanatus HOM05D007010 ORTHO05D008591 1.5e-18 97.1 91 58.2
Potri.006G232200 Populus trichocarpa HOM05D007010 ORTHO05D008591 1.5e-18 97.1 94 60.6
CANSAT56G1710 Cannabis sativa HOM05D007010 ORTHO05D008591 2.0e-18 96.7 96 57.3
Hma1.2p1_0450F.1_g155640 Hydrangea macrophylla HOM05D007010 ORTHO05D008591 2.0e-18 96.7 92 59.8
Solyc12g095940.1 Solanum lycopersicum HOM05D007010 ORTHO05D008591 3.4e-18 95.9 94 57.4
Sopen12g031840 Solanum pennellii HOM05D007010 ORTHO05D008591 3.4e-18 95.9 94 57.4
TAR497G0007 Trochodendron aralioides HOM05D007010 ORTHO05D008591 7.5e-18 94.7 92 59.8
Nn8g38933 Nelumbo nucifera HOM05D007010 ORTHO05D008591 1.7e-17 93.6 88 61.4
Duzib168G1521 Durio zibethinus HOM05D007010 ORTHO05D008591 2.2e-17 93.2 94 61.7
TWI63G1421 Tripterygium wilfordii HOM05D007010 ORTHO05D008591 2.8e-17 92.8 93 52.7
Atru.chr1.3280 Acer truncatum HOM05D007010 ORTHO05D008591 4.8e-17 92.0 98 53.1
CAN.G208.75 Capsicum annuum HOM05D007010 ORTHO05D008591 6.3e-17 91.7 94 56.4
Glyma.13G177700 Glycine max HOM05D007010 ORTHO05D008591 8.3e-17 91.3 97 59.8
Oeu018653.1 Olea europaea HOM05D007010 ORTHO05D008591 1.1e-16 90.9 99 53.5
Lj7P280T30 Lonicera japonica HOM05D007010 ORTHO05D008591 1.8e-16 90.1 96 56.2
Prupe.1G414500 Prunus persica HOM05D007010 ORTHO05D008591 1.8e-16 90.1 221 32.6
MD15G1061800 Malus domestica HOM05D007010 ORTHO05D008591 3.1e-16 89.4 123 41.5
Potri.018G056000 Populus trichocarpa HOM05D007010 ORTHO05D008591 3.1e-16 89.4 95 55.8
THA.LOC104811249 Tarenaya hassleriana HOM05D007010 ORTHO05D008591 3.1e-16 89.4 97 55.7
Oeu037327.1 Olea europaea HOM05D007010 ORTHO05D008591 4.1e-16 89.0 99 52.5
PGSC0003DMG400029388 Solanum tuberosum HOM05D007010 ORTHO05D008591 9.1e-16 87.8 94 54.3
FvH4_2g32140 Fragaria vesca HOM05D007010 ORTHO05D008591 1.2e-15 87.4 93 57.0
FAN24G3148 Fragaria x ananassa HOM05D007010 ORTHO05D008591 1.2e-15 87.4 93 58.1
Haze_18208 Corylus avellana HOM05D007010 ORTHO05D008591 1.6e-15 87.0 166 44.6
SalBow2G0398 Salvia bowleyana HOM05D007010 ORTHO05D008591 2.7e-15 86.3 97 53.6
SalBow2G1284 Salvia bowleyana HOM05D007010 ORTHO05D008591 2.7e-15 86.3 97 53.6
Hund03353 Selenicereus undatus HOM05D007010 ORTHO05D008591 2.7e-15 86.3 91 57.1
Sp6g31840 Schrenkiella parvula HOM05D007010 ORTHO05D008591 3.5e-15 85.9 91 51.6
Sc09g0009690 Simmondsia chinensis HOM05D007010 ORTHO05D008591 3.5e-15 85.9 91 56.0
Cpa.g.sc7.196 Carica papaya HOM05D007010 ORTHO05D008591 4.5e-15 85.5 93 57.0
Lj4g0022512 Lotus japonicus HOM05D007010 ORTHO05D008591 7.7e-15 84.7 179 36.9
Dinv27969 Davidia involucrata HOM05D007010 ORTHO05D008591 1.7e-14 83.6 79 60.8
MD08G1044600 Malus domestica HOM05D007010 ORTHO05D008591 1.7e-14 83.6 122 43.4
RcHm_v2.0_Chr6g0310541 Rosa chinensis HOM05D007010 ORTHO05D008591 1.7e-14 83.6 53 71.7
TAR383G0702 Trochodendron aralioides HOM05D007010 ORTHO05D008591 1.7e-14 83.6 92 53.3
Cfa017938 Carpinus fangiana HOM05D007010 ORTHO05D008591 5.0e-14 82.0 91 56.0
Sp7g31830 Schrenkiella parvula HOM05D007010 ORTHO05D008591 6.5e-14 81.6 94 48.9
SalBow7G3522 Salvia bowleyana HOM05D007010 ORTHO05D008591 1.1e-13 80.9 99 50.5
Gorai.010G102500 Gossypium raimondii HOM05D007010 ORTHO05D008591 2.5e-13 79.7 83 57.8
AUR62009172 Chenopodium quinoa HOM05D007010 ORTHO05D008591 5.5e-13 78.6 90 51.1
SGA_v2.0_scaffold52G19071 Striga asiatica HOM05D007010 ORTHO05D008591 5.5e-13 78.6 98 51.0
Atru.chr7.2115 Acer truncatum HOM05D007010 ORTHO05D008591 1.2e-12 77.4 96 53.1
PSO478G3947 Papaver somniferum HOM05D007010 ORTHO05D008591 1.6e-12 77.0 93 48.4
Migut.L00284 Erythranthe guttata HOM05D007010 ORTHO05D008591 4.7e-12 75.5 117 43.6
FAN27G2071 Fragaria x ananassa HOM05D007010 ORTHO05D008591 6.1e-12 75.1 92 51.1
ECA240G3686 Erigeron canadensis HOM05D007010 ORTHO05D008591 8.0e-12 74.7 110 44.5
Aa31LG3G15440 Aethionema arabicum HOM05D007010 ORTHO05D008591 1.4e-11 73.9 98 43.9
Thhalv10014970m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 1.4e-11 73.9 109 44.0
PGR044G1826 Punica granatum HOM05D007010 ORTHO05D008591 1.8e-11 73.6 91 48.4
FAN20G1932 Fragaria x ananassa HOM05D007010 ORTHO05D008591 2.3e-11 73.2 88 55.7
Manes.03G046700 Manihot esculenta HOM05D007010 ORTHO05D008591 2.3e-11 73.2 106 47.2
Dinv23425 Davidia involucrata HOM05D000575 ORTHO05D004448 3.0e-11 72.8 78 56.4
MBI06_g20720_MAGBIO Magnolia biondii HOM05D007010 ORTHO05D008591 4.0e-11 72.4 104 51.0
Pp3c2_14930 Physcomitrium patens HOM05D007010 ORTHO05D008591 4.0e-11 72.4 109 43.1
ATR0697G019 Amborella trichopoda HOM05D007010 ORTHO05D008591 5.2e-11 72.0 117 41.0
Rhsim11G0045900 Rhododendron simsii HOM05D007010 ORTHO05D008591 1.5e-10 70.5 78 51.3
Aqoxy3G02885 Aquilegia oxysepala HOM05D007010 ORTHO05D008591 2.0e-10 70.1 39 71.8
BcaC01g00931 Brassica carinata HOM05D007010 ORTHO05D008591 2.0e-10 70.1 118 37.3
C03p86090 Brassica napus HOM05D007010 ORTHO05D008591 2.0e-10 70.1 118 37.3
BolC3t20897H Brassica oleracea HOM05D007010 ORTHO05D008591 2.0e-10 70.1 118 37.3
Thhalv10027214m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 2.0e-10 70.1 91 42.9
Lsat_1_v5_gn_9_89520 Lactuca sativa HOM05D007010 ORTHO05D008591 2.6e-10 69.7 94 43.6
TAR636G2520 Trochodendron aralioides HOM05D007010 ORTHO05D008591 2.6e-10 69.7 79 58.2
vmacro00158 Vaccinium macrocarpon HOM05D007010 ORTHO05D008591 3.4e-10 69.3 78 52.6
FAN10G4050 Fragaria x ananassa HOM05D007010 ORTHO05D008591 4.4e-10 68.9 46 63.0
BcaB03g11855 Brassica carinata HOM05D007010 ORTHO05D008591 5.7e-10 68.6 125 36.8
Ca_08538_v3 Cicer arietinum L. HOM05D007010 ORTHO05D008591 3.7e-09 65.9 76 57.9
BraA08t33674Z Brassica rapa HOM05D007010 ORTHO05D008591 8.3e-09 64.7 79 48.1
Sabra06G0180800 Salix brachista HOM05D007010 ORTHO05D008591 1.1e-08 64.3 96 49.0
Sabra06G0180200 Salix brachista HOM05D007010 ORTHO05D008591 1.4e-08 63.9 82 50.0
Mapoly0094s0032 Marchantia polymorpha HOM05D007010 ORTHO05D008591 1.8e-08 63.5 102 39.2
SEGI_19332 Sequoiadendron giganteum HOM05D007010 ORTHO05D008591 1.8e-08 63.5 102 40.2
Nitab4.5_0000738g0150 Nicotiana tabacum HOM05D007010 ORTHO05D008591 2.4e-08 63.2 81 54.3
Nitab4.5_0011306g0020 Nicotiana tabacum HOM05D007010 ORTHO05D008591 2.4e-08 63.2 80 52.5
HanXRQChr13g0410661 Helianthus annuus HOM05D007010 ORTHO05D008591 4.1e-08 62.4 98 48.0
A08p17130 Brassica napus HOM05D007010 ORTHO05D008591 5.4e-08 62.0 83 44.6
DCAR_003084 Daucus carota HOM05D007010 ORTHO05D008591 1.2e-07 60.8 80 48.8
AT5G11760 Arabidopsis thaliana HOM05D007010 ORTHO05D008591 1.6e-07 60.5 40 60.0
Cre09.g395325 Chlamydomonas reinhardtii HOM05D007010 ORTHO05D008591 1.6e-07 60.5 90 37.8
Aa31LG8G6820 Aethionema arabicum HOM05D007010 ORTHO05D008591 2.0e-07 60.1 40 62.5
CARHR201450 Cardamine hirsuta HOM05D007010 ORTHO05D008591 2.7e-07 59.7 128 35.2
CBR_g70706 Chara braunii HOM05D007010 ORTHO05D008591 1.0e-06 57.8 118 35.6
Zm00001eb054150 Zea mays HOM05D007010 ORTHO05D008591 2.3e-06 56.6 111 42.3
EL10As8g23835 Beta vulgaris HOM05D007010 ORTHO05D008591 2.9e-06 56.2 78 43.6
AL6G22510 Arabidopsis lyrata HOM05D007010 ORTHO05D008591 6.6e-06 55.1 106 34.9


User provided reference genes

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