Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 8.4e-154 547.0 272 100.0
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 5.1e-151 537.7 277 97.5
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 2.5e-121 439.1 275 80.0
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 5.9e-107 391.3 279 68.1
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.2e-104 383.6 283 68.6
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 3.9e-103 378.6 280 68.6
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 5.1e-103 378.3 282 69.9
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 3.3e-102 375.6 279 68.8
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 7.4e-102 374.4 281 68.7
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.1e-100 370.5 279 68.1
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-100 370.2 277 68.6
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.8e-100 369.8 277 68.6
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.8e-100 369.8 286 65.0
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.1e-100 367.5 278 68.0
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 2.0e-99 366.3 282 67.0
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.6e-99 365.9 272 67.3
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 5.9e-99 364.8 286 67.1
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 7.7e-99 364.4 286 67.1
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.0e-98 364.0 282 68.1
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 2.2e-98 362.8 284 66.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.1e-97 360.5 282 67.4
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 7.2e-97 357.8 276 64.9
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 4.7e-96 355.1 273 66.7
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 7.9e-96 354.4 276 63.0
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.0e-95 354.0 278 65.5
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.4e-95 353.6 273 64.8
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 3.0e-95 352.4 277 64.6
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.0e-94 349.7 270 65.2
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 3.3e-94 349.0 282 61.0
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 7.4e-94 347.8 279 65.2
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 1.7e-93 346.7 282 64.5
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 1.7e-93 346.7 279 64.2
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 1.1e-92 344.0 286 62.2
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 2.4e-92 342.8 276 62.3
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 3.1e-92 342.4 276 62.0
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 5.3e-92 341.7 269 65.1
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 7.0e-92 341.3 208 80.3
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.2e-91 340.5 288 62.2
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 5.9e-91 338.2 273 64.1
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 7.7e-91 337.8 270 64.8
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.3e-90 337.0 280 62.9
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.7e-90 336.7 270 64.4
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 6.5e-90 334.7 278 60.4
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.1e-89 334.0 279 62.4
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 3.2e-89 332.4 281 62.3
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 4.2e-89 332.0 281 62.3
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 5.5e-89 331.6 281 62.3
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 9.4e-89 330.9 276 61.2
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 2.1e-88 329.7 280 62.9
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.7e-88 329.3 276 59.1
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 3.6e-88 328.9 277 61.4
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 4.7e-88 328.6 276 60.1
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 6.1e-88 328.2 282 60.3
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.4e-87 327.0 282 60.6
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 1.8e-87 326.6 282 60.3
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 3.0e-87 325.9 276 60.1
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 3.0e-87 325.9 265 63.4
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 4.0e-87 325.5 276 59.8
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 5.2e-87 325.1 296 57.4
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 6.7e-87 324.7 284 57.0
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 6.7e-87 324.7 271 62.0
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 6.7e-87 324.7 271 62.0
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 8.8e-87 324.3 287 59.9
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-86 323.9 270 63.0
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 1.5e-86 323.6 271 61.3
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 4.4e-86 322.0 276 60.9
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 4.4e-86 322.0 276 61.2
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 5.7e-86 321.6 281 61.2
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 9.7e-86 320.9 271 61.3
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 9.7e-86 320.9 271 61.6
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 9.7e-86 320.9 270 60.7
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 9.7e-86 320.9 337 53.4
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 1.3e-85 320.5 271 60.9
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.7e-85 320.1 274 60.9
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 1.7e-85 320.1 270 60.7
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 2.2e-85 319.7 276 60.9
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 2.2e-85 319.7 275 61.5
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 2.8e-85 319.3 283 59.0
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 3.7e-85 318.9 274 58.0
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 4.8e-85 318.5 270 60.7
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 4.8e-85 318.5 286 58.4
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 8.2e-85 317.8 273 57.5
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 1.1e-84 317.4 270 60.4
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.4e-84 317.0 273 60.8
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 2.4e-84 316.2 270 60.4
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 3.1e-84 315.8 273 60.4
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 5.3e-84 315.1 229 69.0
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 9.1e-84 314.3 276 59.4
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 3.5e-83 312.4 237 65.8
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 4.5e-83 312.0 281 58.4
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 7.7e-83 311.2 283 59.0
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.9e-82 309.3 210 72.9
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 3.8e-82 308.9 228 68.0
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 5.0e-82 308.5 307 55.4
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 1.5e-81 307.0 267 61.4
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 4.2e-81 305.4 296 55.1
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.4e-79 300.4 267 59.6
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.8e-79 300.1 273 58.6
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 4.0e-79 298.9 222 68.0
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 8.8e-79 297.7 218 65.6
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 3.4e-78 295.8 272 56.6
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 9.8e-78 294.3 283 50.9
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 4.8e-77 292.0 230 63.9
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 1.1e-76 290.8 300 56.0
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 1.4e-76 290.4 272 54.0
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 4.1e-76 288.9 189 73.5
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 4.1e-76 288.9 279 57.7
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 3.8e-74 282.3 230 62.2
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 8.5e-74 281.2 272 52.6
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.5e-73 278.5 259 58.3
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 9.4e-73 277.7 210 64.8
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 6.1e-72 275.0 281 49.8
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 8.0e-72 274.6 237 60.3
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.3e-71 273.1 272 53.3
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 2.0e-70 270.0 216 62.5
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.7e-69 265.8 187 67.4
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 8.3e-69 264.6 197 65.5
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 1.8e-68 263.5 269 50.2
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.3e-66 256.5 212 62.7
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.9e-65 253.4 230 56.1
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 3.6e-64 249.2 194 64.9
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 1.8e-63 246.9 231 56.7
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 2.4e-60 236.5 262 53.1
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 3.2e-60 236.1 262 52.7
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.1e-60 235.7 231 55.0
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.9e-53 212.2 165 64.8
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.1e-49 201.1 284 40.5
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 1.9e-44 183.7 257 39.3
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.8e-40 169.9 206 51.0
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.6e-38 161.8 120 67.5
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 2.7e-35 153.3 116 65.5
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 3.0e-34 149.8 120 62.5
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 1.5e-33 147.5 205 37.6
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 6.2e-32 142.1 96 71.9
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-31 141.0 96 68.8
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.1e-28 131.3 270 31.5
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.4e-22 109.8 87 63.2
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 8.4e-21 105.1 88 61.4
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 3.5e-19 99.8 108 50.9
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 5.1e-18 95.9 93 54.8
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 6.7e-18 95.5 205 35.1
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 6.7e-18 95.5 126 42.1
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 6.7e-18 95.5 135 40.7
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 5.8e-14 82.4 71 50.7
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 7.6e-14 82.0 199 28.1
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.2e-12 76.6 73 54.8
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 7.1e-12 75.5 135 38.5
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 8.7e-10 68.6 49 73.5
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.4e-07 61.2 56 57.1
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.8e-07 60.8 44 65.9
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 9.0e-07 58.5 195 24.1
Medtr8g023540 Medicago truncatula HOM05D004903 ORTHO05D005849 5.8e-06 55.8 61 44.3
Gohir.D06G112500 Gossypium hirsutum HOM05D004903 ORTHO05D036089 1.0e-05 55.1 45 64.4
Gorai.012G060300 Gossypium raimondii HOM05D004903 ORTHO05D036089 1.0e-05 55.1 33 78.8


User provided reference genes

Program Settings