Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 5.6e-40 167.2 84 100.0
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 5.6e-40 167.2 84 100.0
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 4.0e-30 134.4 86 86.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 8.9e-30 133.3 86 84.9
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 9.5e-24 113.2 86 72.1
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 9.5e-24 113.2 86 72.1
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 2.1e-23 112.1 88 70.5
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.6e-23 111.3 86 70.9
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 6.2e-23 110.5 88 69.3
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.1e-22 109.8 88 70.5
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.4e-22 109.4 88 70.5
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.4e-22 109.4 88 69.3
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.3e-22 108.6 88 69.3
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.3e-22 108.6 88 69.3
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 2.3e-22 108.6 88 69.3
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 4.0e-22 107.8 88 69.3
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.2e-22 107.5 88 68.2
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 5.2e-22 107.5 88 68.2
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 6.8e-22 107.1 88 70.5
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 8.9e-22 106.7 88 65.9
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 2.0e-21 105.5 88 65.9
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 2.6e-21 105.1 88 67.0
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 2.6e-21 105.1 88 65.9
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 3.4e-21 104.8 87 69.0
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 4.4e-21 104.4 88 65.9
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 4.4e-21 104.4 87 66.7
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 5.8e-21 104.0 88 65.9
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 9.9e-21 103.2 88 64.8
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 9.9e-21 103.2 87 69.0
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.3e-20 102.8 88 64.8
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.3e-20 102.8 88 65.9
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.3e-20 102.8 88 65.9
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.2e-20 102.1 88 65.9
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.2e-20 102.1 87 66.7
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.9e-20 101.7 88 65.9
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 3.7e-20 101.3 88 63.6
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 4.9e-20 100.9 87 65.5
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 6.4e-20 100.5 88 64.8
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.1e-19 99.8 87 62.1
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.4e-19 99.4 87 64.4
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.4e-19 99.4 87 62.1
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 1.9e-19 99.0 88 63.6
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.9e-19 99.0 85 64.7
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 7.1e-19 97.1 88 60.2
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 9.2e-19 96.7 88 61.4
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 9.2e-19 96.7 88 61.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 9.2e-19 96.7 88 61.4
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.2e-19 96.7 88 61.4
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 2.1e-18 95.5 88 59.1
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 2.1e-18 95.5 87 60.9
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 2.7e-18 95.1 74 70.3
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 2.7e-18 95.1 87 59.8
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 3.5e-18 94.7 88 59.1
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.0e-18 94.0 88 61.4
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.0e-18 94.0 88 60.2
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 7.8e-18 93.6 88 58.0
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.0e-17 93.2 88 58.0
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.3e-17 92.8 88 60.2
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 2.3e-17 92.0 83 62.7
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 3.0e-17 91.7 87 58.6
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.0e-17 91.7 87 60.9
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 5.1e-17 90.9 88 54.5
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 6.6e-17 90.5 88 55.7
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 8.6e-17 90.1 88 55.7
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 8.6e-17 90.1 83 61.4
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.5e-16 89.4 87 57.5
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 3.3e-16 88.2 88 54.5
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 3.3e-16 88.2 85 57.6
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 5.6e-16 87.4 85 56.5
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 7.3e-16 87.0 88 53.4
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 7.3e-16 87.0 85 55.3
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.1e-15 85.5 88 52.3
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 2.8e-15 85.1 85 55.3
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 2.8e-15 85.1 85 54.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 2.8e-15 85.1 85 54.1
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.6e-15 84.7 86 51.2
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 8.1e-15 83.6 85 56.5
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.1e-15 83.6 85 51.8
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 4.0e-14 81.3 48 81.2
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 9.9e-13 76.6 69 65.2
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.3e-12 76.3 69 65.2
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.3e-12 76.3 87 48.3
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.7e-12 75.9 113 42.5
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.9e-12 75.1 70 61.4
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 6.4e-12 73.9 88 46.6
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.1e-11 73.2 88 44.3
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.1e-11 73.2 88 44.3
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.1e-11 73.2 88 44.3
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.9e-11 72.4 69 56.5
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 1.9e-11 72.4 86 47.7
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 3.2e-11 71.6 81 50.6
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 4.1e-11 71.2 75 56.0
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 4.1e-11 71.2 91 53.8
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 2.1e-10 68.9 83 42.2
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 2.1e-10 68.9 89 51.7
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 2.1e-10 68.9 83 42.2
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.7e-10 68.6 70 54.3
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 2.7e-10 68.6 70 54.3
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.6e-10 67.8 53 66.0
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 7.8e-10 67.0 52 65.4
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.0e-09 66.6 76 51.3
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.3e-09 66.2 77 46.8
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 2.3e-09 65.5 88 51.1
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 3.0e-09 65.1 50 60.0
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 9.6e-08 60.1 56 57.1
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.6e-07 59.3 84 45.2
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 9.0e-06 53.5 81 39.5


User provided reference genes

Program Settings