Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.8e-136 489.2 237 100.0
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 4.0e-120 434.9 238 88.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.9e-117 426.0 238 86.6
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 6.0e-116 421.0 238 86.1
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.3e-115 419.1 238 84.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.1e-112 408.7 238 79.8
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.5e-111 406.4 238 82.8
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.5e-111 406.4 238 82.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.5e-111 406.4 238 81.5
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.0e-111 406.0 238 81.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.4e-111 405.2 238 79.8
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-111 405.2 238 82.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-111 405.2 238 82.4
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 5.8e-111 404.4 238 81.1
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 9.9e-111 403.7 238 80.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.9e-110 401.4 239 81.6
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 6.4e-110 401.0 238 80.3
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.1e-109 400.2 239 81.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.5e-109 399.1 238 79.4
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 2.5e-109 399.1 238 78.6
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.2e-109 398.3 239 81.2
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 7.1e-109 397.5 238 79.0
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 9.3e-109 397.1 238 79.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.6e-108 396.4 238 79.4
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.1e-108 396.0 238 79.4
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.1e-108 396.0 238 79.4
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.7e-108 395.6 238 79.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.5e-108 395.2 238 76.9
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.5e-108 395.2 238 79.8
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 6.0e-108 394.4 238 77.3
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 7.9e-108 394.0 238 79.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.0e-107 393.7 238 77.3
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.3e-107 393.3 238 78.6
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.3e-107 393.3 238 78.2
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.8e-107 392.9 238 77.7
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.8e-107 392.9 238 78.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.8e-107 392.9 238 79.0
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 3.0e-107 392.1 238 78.2
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.0e-107 392.1 238 79.0
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 3.9e-107 391.7 239 80.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 5.1e-107 391.3 239 79.9
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.1e-106 390.2 238 78.2
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.5e-106 389.8 238 77.3
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.5e-106 389.8 238 77.7
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 3.3e-106 388.7 238 77.7
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.6e-106 387.9 238 77.3
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.4e-106 387.5 238 77.3
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 7.4e-106 387.5 238 77.3
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.4e-106 387.5 238 76.9
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 9.6e-106 387.1 238 76.9
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.3e-105 386.7 238 77.3
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.6e-105 386.3 238 78.6
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-105 386.3 238 76.9
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-105 386.3 238 76.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.6e-105 386.3 238 76.5
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.1e-105 386.0 238 76.5
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.1e-105 386.0 238 78.6
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.8e-105 385.6 238 76.9
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.8e-105 385.6 239 78.2
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.7e-105 385.2 238 75.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 4.8e-105 384.8 238 76.1
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 8.2e-105 384.0 238 77.3
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-104 383.6 238 76.1
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-104 383.6 238 76.1
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.4e-104 382.5 238 77.3
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.4e-104 382.5 239 78.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 3.1e-104 382.1 238 77.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 4.0e-104 381.7 238 76.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.0e-104 381.7 238 77.7
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 9.0e-104 380.6 238 76.5
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.2e-103 380.2 238 76.1
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.5e-103 379.8 238 74.8
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.0e-103 379.4 238 77.3
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.6e-103 379.0 238 74.4
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.4e-103 378.6 238 74.4
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 4.5e-103 378.3 238 76.5
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 5.8e-103 377.9 238 75.6
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.8e-103 377.9 238 74.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.2e-102 375.9 238 74.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 6.5e-102 374.4 238 76.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-101 372.9 238 76.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-101 372.9 238 76.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.1e-101 370.9 239 72.4
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 9.3e-101 370.5 238 72.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.2e-100 370.2 238 73.5
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 5.1e-99 364.8 238 71.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.5e-98 362.5 239 71.1
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.3e-98 361.7 238 72.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.6e-97 359.8 238 70.6
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 4.8e-97 358.2 240 69.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.2e-95 353.6 238 70.2
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.2e-95 353.6 240 72.1
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.5e-95 353.2 240 72.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.0e-95 352.8 238 71.0
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.0e-95 352.8 222 74.3
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 6.5e-94 347.8 248 67.7
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.5e-94 347.8 238 69.3
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.1e-93 347.1 250 68.0
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 4.2e-93 345.1 248 67.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 5.5e-93 344.7 248 67.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.2e-92 343.6 249 67.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-92 343.6 249 67.1
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.6e-92 343.2 237 69.2
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 4.6e-92 341.7 249 66.3
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 4.6e-92 341.7 241 68.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 6.1e-92 341.3 238 67.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.8e-91 339.7 249 66.3
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.0e-91 339.0 249 65.5
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.0e-91 339.0 257 64.6
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.5e-90 336.7 236 67.4
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.5e-90 336.7 244 65.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.3e-89 333.6 242 67.4
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.8e-89 331.6 238 63.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 4.1e-88 328.6 238 65.5
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 6.9e-88 327.8 238 63.0
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.6e-87 325.9 238 68.5
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.2e-86 322.8 239 66.9
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.1e-84 316.2 240 63.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.0e-83 313.9 196 76.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-80 303.1 248 62.1
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 4.5e-79 298.5 238 64.7
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-78 296.6 262 57.6
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.4e-74 281.2 198 69.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.3e-73 280.4 198 69.7
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.8e-67 260.0 165 75.2
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.2e-63 247.3 240 53.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.6e-55 220.3 245 44.5
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.0e-54 217.6 250 41.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.6e-52 210.3 241 44.0
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-51 206.5 188 55.9
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 8.0e-44 181.4 108 78.7
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 7.5e-42 174.9 121 69.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.5e-34 150.6 163 49.1
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.1e-32 142.5 97 73.2
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 5.1e-22 109.0 121 51.2
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.8e-20 103.2 76 60.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.8e-20 103.2 76 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.6e-20 102.8 123 43.1
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-19 100.9 76 59.2
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.8e-19 100.5 175 38.3
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 9.9e-18 94.7 76 55.3
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 9.9e-18 94.7 76 55.3
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.2e-16 89.4 72 61.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.2e-15 87.8 50 74.0
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-15 85.1 241 25.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.3e-14 83.6 59 62.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-11 74.7 46 69.6
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.1e-11 74.7 46 69.6
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.2e-08 62.8 35 88.6
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 8.7e-06 55.1 56 46.4
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 8.7e-06 55.1 56 46.4


User provided reference genes

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