Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p096712 Quercus lobata HOM05D004517 ORTHO05D005366 1.5e-48 196.1 112 100.0
QL04p096840 Quercus lobata HOM05D004517 ORTHO05D005366 7.5e-16 87.4 106 57.5
Gohir.A03G211300 Gossypium hirsutum HOM05D004517 ORTHO05D005366 2.2e-15 85.9 108 64.8
Gohir.D02G232900 Gossypium hirsutum HOM05D004517 ORTHO05D005366 2.2e-15 85.9 108 64.8
Gorai.005G260700 Gossypium raimondii HOM05D004517 ORTHO05D005366 2.2e-15 85.9 108 64.8
MELO3C014379.2 Cucumis melo HOM05D004517 ORTHO05D005366 1.1e-14 83.6 114 55.3
Duzib132G0873 Durio zibethinus HOM05D004517 ORTHO05D005366 3.1e-14 82.0 108 61.1
CiPaw.05G043700 Carya illinoinensis HOM05D004517 ORTHO05D005366 5.3e-14 81.3 114 55.3
CsaV3_6G037380 Cucumis sativus L. HOM05D004517 ORTHO05D005366 5.3e-14 81.3 114 55.3
Sed0012766 Sechium edule HOM05D004517 ORTHO05D005366 9.1e-14 80.5 114 56.1
CiPaw.06G148000 Carya illinoinensis HOM05D004517 ORTHO05D005366 1.2e-13 80.1 114 54.4
ClCG09G014350 Citrullus lanatus HOM05D004517 ORTHO05D005366 1.6e-13 79.7 112 54.5
Manes.10G130100 Manihot esculenta HOM05D004517 ORTHO05D005366 2.0e-13 79.3 108 60.2
Prupe.1G567400 Prunus persica HOM05D004517 ORTHO05D005366 2.0e-13 79.3 106 57.5
Sc03g0005930 Simmondsia chinensis HOM05D004517 ORTHO05D005366 3.5e-13 78.6 89 64.0
Manes.07G015100 Manihot esculenta HOM05D004517 ORTHO05D005366 4.5e-13 78.2 108 59.3
MD08G1228000 Malus domestica HOM05D004517 ORTHO05D005366 5.9e-13 77.8 106 55.7
MD15G1422000 Malus domestica HOM05D004517 ORTHO05D005366 1.0e-12 77.0 106 56.6
Dinv24268 Davidia involucrata HOM05D004517 ORTHO05D005366 1.3e-12 76.6 112 53.6
Phvul.006G213600 Phaseolus vulgaris HOM05D004517 ORTHO05D005366 1.3e-12 76.6 108 59.3
RcHm_v2.0_Chr7g0222671 Rosa chinensis HOM05D004517 ORTHO05D005366 2.2e-12 75.9 106 56.6
FvH4_5g29610 Fragaria vesca HOM05D004517 ORTHO05D005366 2.9e-12 75.5 106 56.6
FAN08G3228 Fragaria x ananassa HOM05D004517 ORTHO05D005366 2.9e-12 75.5 106 56.6
FAN13G2755 Fragaria x ananassa HOM05D004517 ORTHO05D005366 2.9e-12 75.5 106 56.6
FAN18G2310 Fragaria x ananassa HOM05D004517 ORTHO05D005366 2.9e-12 75.5 106 56.6
Hund15513 Selenicereus undatus HOM05D004517 ORTHO05D005366 2.9e-12 75.5 89 62.9
TWI59G1197 Tripterygium wilfordii HOM05D004517 ORTHO05D005366 2.9e-12 75.5 105 56.2
Atru.chr4.59 Acer truncatum HOM05D004517 ORTHO05D005366 3.8e-12 75.1 114 52.6
Glyma.08G185500 Glycine max HOM05D004517 ORTHO05D005366 3.8e-12 75.1 108 59.3
Glyma.15G047200 Glycine max HOM05D004517 ORTHO05D005366 3.8e-12 75.1 108 59.3
Gohir.A12G032100 Gossypium hirsutum HOM05D004517 ORTHO05D005366 3.8e-12 75.1 108 60.2
Gohir.D12G040200 Gossypium hirsutum HOM05D004517 ORTHO05D005366 3.8e-12 75.1 108 60.2
Gorai.008G041900 Gossypium raimondii HOM05D004517 ORTHO05D005366 3.8e-12 75.1 108 60.2
Sed0014676 Sechium edule HOM05D004517 ORTHO05D005366 3.8e-12 75.1 114 51.8
GSVIVG01022976001 Vitis vinifera HOM05D004517 ORTHO05D005366 3.8e-12 75.1 114 52.6
arahy.Tifrunner.gnm1.ann1.RA8HQM Arachis hypogaea HOM05D004517 ORTHO05D005366 6.5e-12 74.3 89 65.2
CSS0006387 Camellia sinensis var. sinensis HOM05D004517 ORTHO05D005366 6.5e-12 74.3 114 54.4
CSS0045081 Camellia sinensis var. sinensis HOM05D004517 ORTHO05D005366 6.5e-12 74.3 114 54.4
Eucgr.G00606 Eucalyptus grandis HOM05D004517 ORTHO05D005366 6.5e-12 74.3 108 58.3
Lalb_Chr07g0185721 Lupinus albus HOM05D004517 ORTHO05D005366 6.5e-12 74.3 106 58.5
Nitab4.5_0010875g0020 Nicotiana tabacum HOM05D004517 ORTHO05D005366 6.5e-12 74.3 108 56.5
VMungo0540G0447 Vigna mungo HOM05D004517 ORTHO05D005366 6.5e-12 74.3 108 56.5
Cc02_g22420 Coffea canephora HOM05D004517 ORTHO05D005366 8.5e-12 73.9 114 50.0
FAN04G1222 Fragaria x ananassa HOM05D004517 ORTHO05D005366 8.5e-12 73.9 106 55.7
Aqoxy6G00170 Aquilegia oxysepala HOM05D004517 ORTHO05D005366 1.5e-11 73.2 115 49.6
Potri.003G019600 Populus trichocarpa HOM05D004517 ORTHO05D005366 1.5e-11 73.2 112 55.4
SGA_v2.0_scaffold1G00310 Striga asiatica HOM05D004517 ORTHO05D005366 1.5e-11 73.2 115 51.3
Potri.001G210500 Populus trichocarpa HOM05D004517 ORTHO05D005366 1.9e-11 72.8 112 55.4
TWI14G0624 Tripterygium wilfordii HOM05D004517 ORTHO05D005366 1.9e-11 72.8 106 57.5
Ah.03g137090 Amaranthus hybridus HOM05D004517 ORTHO05D005366 2.5e-11 72.4 108 55.6
Duzib052G0369 Durio zibethinus HOM05D004517 ORTHO05D005366 2.5e-11 72.4 89 64.0
ECA240G0862 Erigeron canadensis HOM05D004517 ORTHO05D005366 2.5e-11 72.4 89 65.2
HanXRQChr03g0066801 Helianthus annuus HOM05D004517 ORTHO05D005366 2.5e-11 72.4 89 65.2
Sabra03G0011100 Salix brachista HOM05D004517 ORTHO05D005366 2.5e-11 72.4 114 54.4
arahy.Tifrunner.gnm1.ann1.57R94V Arachis hypogaea HOM05D004517 ORTHO05D005366 3.2e-11 72.0 108 58.3
MSTRG.16525 Avicennia marina HOM05D004517 ORTHO05D005366 3.2e-11 72.0 105 57.1
TAR381G0217 Trochodendron aralioides HOM05D004517 ORTHO05D005366 3.2e-11 72.0 114 51.8
Lalb_Chr13g0295731 Lupinus albus HOM05D004517 ORTHO05D005366 4.2e-11 71.6 106 57.5
HanXRQChr06g0185081 Helianthus annuus HOM05D004517 ORTHO05D005366 5.5e-11 71.2 89 64.0
Hma1.2p1_0179F.1_g079410 Hydrangea macrophylla HOM05D004517 ORTHO05D005366 7.2e-11 70.9 89 59.6
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 9.4e-11 70.5 112 54.5
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 9.4e-11 70.5 112 54.5
Lalb_Chr12g0204431 Lupinus albus HOM05D004517 ORTHO05D005366 9.4e-11 70.5 108 58.3
BcaNung01251 Brassica carinata HOM05D004517 ORTHO05D005366 2.1e-10 69.3 112 53.6
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 2.1e-10 69.3 112 53.6
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 2.1e-10 69.3 112 53.6
PGR042G1879 Punica granatum HOM05D004517 ORTHO05D005366 2.1e-10 69.3 114 54.4
PGR142G2391 Punica granatum HOM05D004517 ORTHO05D005366 2.1e-10 69.3 114 50.9
DCAR_013989 Daucus carota HOM05D004517 ORTHO05D005366 3.6e-10 68.6 89 64.0
EL10Ac6g14070 Beta vulgaris HOM05D004517 ORTHO05D005366 4.7e-10 68.2 108 52.8
Migut.B00843 Erythranthe guttata HOM05D004517 ORTHO05D005366 4.7e-10 68.2 114 49.1
Ca_01805_v3 Cicer arietinum L. HOM05D004517 ORTHO05D005366 6.1e-10 67.8 108 57.4
Lsat_1_v5_gn_9_118341 Lactuca sativa HOM05D004517 ORTHO05D005366 6.1e-10 67.8 89 62.9
Solyc10g045630.2 Solanum lycopersicum HOM05D004517 ORTHO05D005366 6.1e-10 67.8 114 50.0
Sopen10g015980 Solanum pennellii HOM05D004517 ORTHO05D005366 6.1e-10 67.8 114 50.0
unitig_578.g16342 Utricularia gibba HOM05D004517 ORTHO05D005366 6.1e-10 67.8 105 50.5
Thhalv10003985m.g Eutrema salsugineum HOM05D004517 ORTHO05D005366 8.0e-10 67.4 105 55.2
CAN.G1577.11 Capsicum annuum HOM05D004517 ORTHO05D005366 1.0e-09 67.0 108 54.6
unitig_8.g4525 Utricularia gibba HOM05D004517 ORTHO05D005366 1.0e-09 67.0 114 48.2
PSO170G6572 Papaver somniferum HOM05D004517 ORTHO05D005366 1.4e-09 66.6 89 56.2
PSO782G4069 Papaver somniferum HOM05D004517 ORTHO05D005366 1.4e-09 66.6 89 56.2
Psat5g246640 Pisum sativum HOM05D004517 ORTHO05D005366 1.4e-09 66.6 89 61.8
AUR62042719 Chenopodium quinoa HOM05D004517 ORTHO05D005366 1.8e-09 66.2 105 49.5
Medtr2g081000 Medicago truncatula HOM05D004517 ORTHO05D005366 1.8e-09 66.2 106 57.5
TAR628G0747 Trochodendron aralioides HOM05D004517 ORTHO05D005366 1.8e-09 66.2 114 48.2
Solyc01g104270.4 Solanum lycopersicum HOM05D004517 ORTHO05D005366 5.2e-09 64.7 87 56.3
Sopen01g046710 Solanum pennellii HOM05D004517 ORTHO05D005366 5.2e-09 64.7 87 56.3
PGSC0003DMG400023789 Solanum tuberosum HOM05D004517 ORTHO05D005366 5.2e-09 64.7 87 56.3
Oeu008886.2 Olea europaea HOM05D004517 ORTHO05D005366 1.2e-08 63.5 97 53.6
Oeu012748.1 Olea europaea HOM05D004517 ORTHO05D005366 1.2e-08 63.5 105 50.5
Aa31LG11G3940 Aethionema arabicum HOM05D004517 ORTHO05D005366 1.5e-08 63.2 108 56.5
MBI04_g04857_MAGBIO Magnolia biondii HOM05D004517 ORTHO05D005366 4.4e-08 61.6 66 51.5
AL6G36300 Arabidopsis lyrata HOM05D004517 ORTHO05D005366 5.7e-08 61.2 108 50.9
AT5G24690 Arabidopsis thaliana HOM05D004517 ORTHO05D005366 5.7e-08 61.2 108 50.9
Carub.0006s2255 Capsella rubella HOM05D004517 ORTHO05D005366 5.7e-08 61.2 108 50.9
SalBow5G4543 Salvia bowleyana HOM05D004517 ORTHO05D005366 5.7e-08 61.2 108 54.6
Sp2g22710 Schrenkiella parvula HOM05D004517 ORTHO05D005366 5.7e-08 61.2 108 56.5
HPP92_010826 Vanilla planifolia HOM05D004517 ORTHO05D005366 7.5e-08 60.8 102 54.9
ATR0626G335 Amborella trichopoda HOM05D004517 ORTHO05D005366 1.3e-07 60.1 66 50.0
QL04p096680 Quercus lobata HOM05D004517 ORTHO05D005366 1.3e-07 60.1 71 49.3
Actinidia00209 Actinidia chinensis HOM05D004517 ORTHO05D005366 3.7e-07 58.5 87 58.6
C09p07150 Brassica napus HOM05D004517 ORTHO05D005366 4.8e-07 58.2 109 56.0
COL.COLO4_17875 Corchorus olitorius HOM05D004517 ORTHO05D005366 8.3e-07 57.4 47 61.7
Thecc.02G039300 Theobroma cacao HOM05D004517 ORTHO05D005366 1.4e-06 56.6 66 53.0
Zm00001eb132890 Zea mays HOM05D004517 ORTHO05D005366 2.4e-06 55.8 87 59.8


User provided reference genes

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