Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p096383 Quercus lobata HOM05D000246 ORTHO05D009147 1.5e-176 622.9 339 100.0
Cfa017778 Carpinus fangiana HOM05D000246 ORTHO05D009147 1.5e-91 340.5 345 58.8
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 2.6e-88 329.7 296 64.5
CiPaw.15G110300 Carya illinoinensis HOM05D000246 ORTHO05D009147 2.2e-79 300.1 346 55.5
Ciclev10005602m.g Citrus clementina HOM05D000246 ORTHO05D009147 7.4e-67 258.5 345 49.0
Prupe.4G124100 Prunus persica HOM05D000246 ORTHO05D009147 1.4e-65 254.2 298 54.0
Gorai.004G255500 Gossypium raimondii HOM05D000246 ORTHO05D009147 3.8e-63 246.1 301 51.2
Gohir.A08G221640 Gossypium hirsutum HOM05D000246 ORTHO05D009147 1.1e-62 244.6 301 51.2
Gohir.D08G240200 Gossypium hirsutum HOM05D000246 ORTHO05D009147 5.5e-62 242.3 301 50.8
Manes.16G053100 Manihot esculenta HOM05D000246 ORTHO05D009147 3.6e-61 239.6 269 52.4
COL.COLO4_32273 Corchorus olitorius HOM05D000246 ORTHO05D009147 4.6e-61 239.2 291 51.5
MD05G1241400 Malus domestica HOM05D000246 ORTHO05D009147 4.6e-61 239.2 276 53.3
Glyma.08G160700 Glycine max HOM05D000246 ORTHO05D009147 1.0e-60 238.0 292 48.6
Duzib213G0662 Durio zibethinus HOM05D000246 ORTHO05D009147 1.4e-60 237.7 272 54.0
Sabra10G0135600 Salix brachista HOM05D000246 ORTHO05D009147 1.8e-60 237.3 301 50.5
Potri.010G176100 Populus trichocarpa HOM05D000246 ORTHO05D009147 2.4e-57 226.9 291 50.5
Medtr2g062820 Medicago truncatula HOM05D000246 ORTHO05D009147 5.3e-57 225.7 295 43.7
Dinv19568 Davidia involucrata HOM05D000246 ORTHO05D009147 6.9e-57 225.3 273 49.8
VMungo1080G0726 Vigna mungo HOM05D000246 ORTHO05D009147 1.5e-56 224.2 296 45.6
FAN16G3184 Fragaria x ananassa HOM05D000246 ORTHO05D009147 3.4e-56 223.0 295 47.8
Lj3g0006435 Lotus japonicus HOM05D000246 ORTHO05D009147 1.3e-55 221.1 296 46.6
FvH4_3g13660 Fragaria vesca HOM05D000246 ORTHO05D009147 2.2e-55 220.3 291 48.1
FAN11G1354 Fragaria x ananassa HOM05D000246 ORTHO05D009147 2.2e-55 220.3 291 48.1
Thecc.07G193000 Theobroma cacao HOM05D000246 ORTHO05D009147 3.2e-54 216.5 294 47.6
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 2.1e-53 213.8 293 44.0
Phvul.005G044100 Phaseolus vulgaris HOM05D000246 ORTHO05D009147 6.1e-53 212.2 294 45.6
GSVIVG01036688001 Vitis vinifera HOM05D000246 ORTHO05D009147 7.9e-53 211.8 301 46.8
Psat1g130960 Pisum sativum HOM05D000246 ORTHO05D009147 3.9e-52 209.5 294 42.9
Lalb_Chr25g0284061 Lupinus albus HOM05D000246 ORTHO05D009147 1.1e-51 208.0 293 43.7
CSS0016646 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D009147 5.7e-51 205.7 272 46.0
MSTRG.14574 Avicennia marina HOM05D000246 ORTHO05D009147 2.8e-50 203.4 291 45.0
CANSAT56G0995 Cannabis sativa HOM05D000246 ORTHO05D009147 3.7e-50 203.0 273 48.7
ClCG02G018880 Citrullus lanatus HOM05D000246 ORTHO05D009147 1.2e-48 198.0 289 47.1
Migut.H01647 Erythranthe guttata HOM05D000246 ORTHO05D009147 1.5e-48 197.6 266 47.0
Oeu029459.1 Olea europaea HOM05D000246 ORTHO05D009147 7.7e-48 195.3 271 46.5
Solyc01g005910.3 Solanum lycopersicum HOM05D000246 ORTHO05D009147 7.7e-48 195.3 284 45.1
AUR62027960 Chenopodium quinoa HOM05D000246 ORTHO05D009147 6.5e-47 192.2 292 46.2
arahy.Tifrunner.gnm1.ann1.A1BQQJ Arachis hypogaea HOM05D000246 ORTHO05D009147 8.5e-47 191.8 300 42.3
vmacro09761 Vaccinium macrocarpon HOM05D000246 ORTHO05D009147 1.9e-46 190.7 325 42.5
PGSC0003DMG400032135 Solanum tuberosum HOM05D000246 ORTHO05D009147 2.5e-46 190.3 268 45.9
Sopen01g001920 Solanum pennellii HOM05D000246 ORTHO05D009147 5.5e-46 189.1 284 44.0
arahy.Tifrunner.gnm1.ann1.W0YB5X Arachis hypogaea HOM05D000246 ORTHO05D009147 1.2e-45 188.0 312 41.3
MBI07_g10938_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D009147 4.7e-45 186.0 294 40.1
Sed0004446 Sechium edule HOM05D000246 ORTHO05D009147 1.0e-44 184.9 280 45.7
Peaxi162Scf00100g00211 Petunia axillaris HOM05D000246 ORTHO05D009147 1.4e-44 184.5 266 45.5
Atru.chr1.7 Acer truncatum HOM05D000246 ORTHO05D009147 1.8e-44 184.1 274 47.1
AUR62020752 Chenopodium quinoa HOM05D000246 ORTHO05D009147 2.3e-44 183.7 292 44.9
Sc23g0006300 Simmondsia chinensis HOM05D000246 ORTHO05D009147 3.9e-44 183.0 290 42.4
TPR.G3627 Trifolium pratense HOM05D000246 ORTHO05D009147 6.7e-44 182.2 304 39.5
MELO3C019603.2 Cucumis melo HOM05D000246 ORTHO05D009147 1.5e-43 181.0 271 45.0
Nitab4.5_0000775g0010 Nicotiana tabacum HOM05D000246 ORTHO05D009147 1.5e-43 181.0 334 38.9
RcHm_v2.0_Chr5g0022891 Rosa chinensis HOM05D000246 ORTHO05D009147 7.4e-43 178.7 294 41.2
CsaV3_6G013310 Cucumis sativus L. HOM05D000246 ORTHO05D009147 2.2e-42 177.2 298 41.9
Cc00_g09080 Coffea canephora HOM05D000246 ORTHO05D009147 2.8e-42 176.8 282 40.8
THA.LOC104815716 Tarenaya hassleriana HOM05D000246 ORTHO05D009147 1.1e-41 174.9 295 41.7
EL10Ac2g03603 Beta vulgaris HOM05D000246 ORTHO05D009147 1.8e-41 174.1 273 43.2
TWI59G1123 Tripterygium wilfordii HOM05D000246 ORTHO05D009147 4.1e-41 172.9 284 45.4
SalBow1G6486 Salvia bowleyana HOM05D000246 ORTHO05D009147 7.0e-41 172.2 301 40.5
DCAR_019903 Daucus carota HOM05D000246 ORTHO05D009147 2.0e-40 170.6 296 41.6
AT3G12685 Arabidopsis thaliana HOM05D000246 ORTHO05D009147 4.5e-40 169.5 294 42.2
Rhsim04G0003700 Rhododendron simsii HOM05D000146 ORTHO05D000178 4.5e-40 169.5 299 40.8
Hund03211 Selenicereus undatus HOM05D000246 ORTHO05D009147 4.5e-40 169.5 269 43.9
SGA_v2.0_scaffold239G43996 Striga asiatica HOM05D000246 ORTHO05D009147 4.5e-40 169.5 268 45.9
QL04p096351 Quercus lobata HOM05D000132 ORTHO05D000058 7.7e-40 168.7 99 88.9
Aqoxy6G02815 Aquilegia oxysepala HOM05D000246 ORTHO05D009147 1.7e-39 167.5 296 38.2
AL3G24360 Arabidopsis lyrata HOM05D000246 ORTHO05D009147 2.9e-39 166.8 339 38.6
Thhalv10021510m.g Eutrema salsugineum HOM05D000246 ORTHO05D009147 1.9e-38 164.1 273 42.5
CARHR087200 Cardamine hirsuta HOM05D000246 ORTHO05D009147 4.2e-38 162.9 294 41.2
Carub.0003s1204 Capsella rubella HOM05D000246 ORTHO05D009147 9.4e-38 161.8 273 41.0
Cpa.g.sc118.5 Carica papaya HOM05D000246 ORTHO05D009147 9.4e-38 161.8 271 39.9
CSS0001858 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D009147 1.2e-37 161.4 283 40.3
PSO675G2776 Papaver somniferum HOM05D000246 ORTHO05D009147 1.0e-36 158.3 271 39.1
Eucgr.F04484 Eucalyptus grandis HOM05D000246 ORTHO05D009147 1.4e-36 157.9 295 40.7
Nitab4.5_0001059g0130 Nicotiana tabacum HOM05D000246 ORTHO05D009147 2.3e-36 157.1 289 41.5
BcaB04g21046 Brassica carinata HOM05D000146 ORTHO05D009147 4.0e-36 156.4 294 38.1
HanXRQChr11g0335881 Helianthus annuus HOM05D000246 ORTHO05D009147 8.8e-36 155.2 275 41.5
BcaC09g48255 Brassica carinata HOM05D000246 ORTHO05D009147 1.5e-35 154.5 294 37.8
Lj5P743T17 Lonicera japonica HOM05D000246 ORTHO05D009147 3.3e-35 153.3 282 39.7
BcaNung07028 Brassica carinata HOM05D000246 ORTHO05D009147 4.4e-35 152.9 294 37.8
C01p52490 Brassica napus HOM05D000246 ORTHO05D009147 4.4e-35 152.9 294 37.8
BolC1t05187H Brassica oleracea HOM05D000246 ORTHO05D009147 4.4e-35 152.9 294 37.8
BraA01t04116Z Brassica rapa HOM05D000246 ORTHO05D009147 3.7e-34 149.8 310 36.8
Aa31LG7G3500 Aethionema arabicum HOM05D000246 ORTHO05D009147 1.1e-33 148.3 274 37.2
unitig_0.g970 Utricularia gibba HOM05D000246 ORTHO05D009147 1.8e-33 147.5 291 39.9
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 2.4e-33 147.1 256 40.2
BNapus_Darmor_BZH_scaffold_149p00210 Brassica napus HOM05D000246 ORTHO05D009147 1.6e-32 144.4 263 41.1
PGR044G1535 Punica granatum HOM05D000246 ORTHO05D009147 1.0e-31 141.7 280 39.6
Lsat_1_v5_gn_7_111020 Lactuca sativa HOM05D000246 ORTHO05D009147 2.2e-31 140.6 266 39.1
HPP92_020022 Vanilla planifolia HOM05D000246 ORTHO05D009147 6.5e-31 139.0 275 38.5
TAR627G1110 Trochodendron aralioides HOM05D000246 ORTHO05D009147 7.2e-30 135.6 90 73.3
Zm00001eb277880 Zea mays HOM05D000246 ORTHO05D009147 7.2e-30 135.6 273 37.7
CDE10G0049 Ceratophyllum demersum HOM05D000246 ORTHO05D009147 9.4e-30 135.2 262 35.1
FAN25G2424 Fragaria x ananassa HOM05D000246 ORTHO05D009147 9.4e-30 135.2 201 43.3
ATR0737G104 Amborella trichopoda HOM05D000246 ORTHO05D009147 6.1e-29 132.5 275 33.8
Oeu034803.1 Olea europaea HOM05D000246 ORTHO05D009147 3.0e-28 130.2 109 64.2
Nn4g26672 Nelumbo nucifera HOM05D000246 ORTHO05D009147 4.0e-28 129.8 298 33.6
Actinidia00851 Actinidia chinensis HOM05D000246 ORTHO05D009147 5.7e-27 125.9 292 36.0
Sp3g10840 Schrenkiella parvula HOM05D000246 ORTHO05D009147 2.0e-24 117.5 263 36.5
Hma1.2p1_1417F.1_g282150 Hydrangea macrophylla HOM05D000246 ORTHO05D009147 1.5e-22 111.3 83 69.9
Sabra01G0090000 Salix brachista HOM05D005208 ORTHO05D009147 3.4e-19 100.1 136 48.5
AagrBONN_evm.TU.Sc2ySwM_117.699 Anthoceros agrestis HOM05D000246 ORTHO05D009147 2.8e-18 97.1 309 28.8
Pp3c26_3480 Physcomitrium patens HOM05D000246 ORTHO05D009147 8.3e-18 95.5 295 27.8
SMO142G0076 Selaginella moellendorffii HOM05D000246 ORTHO05D009147 8.3e-18 95.5 283 30.0
TAR576G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.0e-16 90.9 121 44.6
Pp3c4_23210 Physcomitrium patens HOM05D000246 ORTHO05D009147 7.8e-16 89.0 296 27.0
Mapoly0003s0007 Marchantia polymorpha HOM05D000246 ORTHO05D009147 1.3e-15 88.2 301 27.9
BcaB04g21456 Brassica carinata HOM05D000246 ORTHO05D009147 1.7e-15 87.8 301 28.9
Os06g0530300 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D009147 8.6e-15 85.5 219 33.3
CBR_g37318 Chara braunii HOM05D000246 ORTHO05D009147 1.9e-14 84.3 296 26.4
Potri.008G080401 Populus trichocarpa HOM05D000246 ORTHO05D009147 3.6e-13 80.1 107 48.6
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.4e-12 78.2 245 28.6
Hma1.2p1_3527F.1_g336570 Hydrangea macrophylla HOM05D000246 ORTHO05D009147 1.2e-11 75.1 198 33.3
Aqoxy1G03454 Aquilegia oxysepala HOM05D000178 ORTHO05D000229 2.7e-08 63.9 89 44.9
CDE10G0104 Ceratophyllum demersum HOM05D000246 ORTHO05D009147 3.5e-08 63.5 76 47.4
unitig_44.g31556 Utricularia gibba HOM05D000246 ORTHO05D001057 3.5e-08 63.5 81 44.4
unitig_578.g16285 Utricularia gibba HOM05D000246 ORTHO05D001057 3.5e-08 63.5 81 44.4
MCO11G279 Micromonas commoda HOM05D000246 ORTHO05D001057 6.0e-08 62.8 280 25.0
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 1.7e-07 61.2 131 33.6
Solyc05g014700.3 Solanum lycopersicum HOM05D000246 ORTHO05D001057 8.6e-07 58.9 89 41.6
Sopen05g009870 Solanum pennellii HOM05D000246 ORTHO05D001057 8.6e-07 58.9 89 41.6
Nn3g18987 Nelumbo nucifera HOM05D000246 ORTHO05D001057 1.5e-06 58.2 97 37.1
TAR374G0950 Trochodendron aralioides HOM05D000246 ORTHO05D001057 1.5e-06 58.2 94 38.3
PGSC0003DMG400017444 Solanum tuberosum HOM05D000246 ORTHO05D001057 1.9e-06 57.8 84 42.9
Thecc.01G342300 Theobroma cacao HOM05D000246 ORTHO05D001057 1.9e-06 57.8 120 30.8
TAR629G3455 Trochodendron aralioides HOM05D000246 ORTHO05D001057 1.9e-06 57.8 97 36.1
MD13G1113100 Malus domestica HOM05D000246 ORTHO05D001057 2.5e-06 57.4 89 38.2
MD16G1112000 Malus domestica HOM05D000246 ORTHO05D001057 2.5e-06 57.4 89 37.1
Medtr2g087870 Medicago truncatula HOM05D000246 ORTHO05D001057 2.5e-06 57.4 84 39.3
THA.LOC104802074 Tarenaya hassleriana HOM05D000246 ORTHO05D001057 2.5e-06 57.4 120 30.8
THA.LOC104809981 Tarenaya hassleriana HOM05D000246 ORTHO05D001057 2.5e-06 57.4 120 30.8
HPP92_020255 Vanilla planifolia HOM05D000246 ORTHO05D001057 2.5e-06 57.4 89 36.0
Gohir.A03G128500 Gossypium hirsutum HOM05D000246 ORTHO05D001057 3.3e-06 57.0 89 39.3
Gohir.D02G152300 Gossypium hirsutum HOM05D000246 ORTHO05D001057 3.3e-06 57.0 89 39.3
Gorai.005G171300 Gossypium raimondii HOM05D000246 ORTHO05D001057 3.3e-06 57.0 89 39.3
Mapoly0044s0020 Marchantia polymorpha HOM05D000246 ORTHO05D001057 3.3e-06 57.0 113 31.9
Nitab4.5_0011772g0010 Nicotiana tabacum HOM05D000246 ORTHO05D001057 3.3e-06 57.0 89 39.3
TWI36G0890 Tripterygium wilfordii HOM05D000246 ORTHO05D001057 3.3e-06 57.0 89 39.3
MELO3C011887.2 Cucumis melo HOM05D000246 ORTHO05D001057 4.3e-06 56.6 89 40.4
CsaV3_5G030490 Cucumis sativus L. HOM05D000246 ORTHO05D001057 4.3e-06 56.6 89 40.4
Nitab4.5_0000240g0080 Nicotiana tabacum HOM05D000246 ORTHO05D001057 4.3e-06 56.6 84 40.5
Sed0027109 Sechium edule HOM05D000246 ORTHO05D001057 4.3e-06 56.6 89 40.4
PGSC0003DMG400000113 Solanum tuberosum HOM05D000246 ORTHO05D001057 4.3e-06 56.6 120 30.0
HPP92_008159 Vanilla planifolia HOM05D000246 ORTHO05D001057 4.3e-06 56.6 84 40.5
AagrBONN_evm.TU.Sc2ySwM_117.2194 Anthoceros agrestis HOM05D000246 ORTHO05D001057 5.6e-06 56.2 107 31.8
CANSAT64G1435 Cannabis sativa HOM05D000246 ORTHO05D001057 5.6e-06 56.2 87 41.4
PSO170G5064 Papaver somniferum HOM05D000246 ORTHO05D001057 5.6e-06 56.2 97 34.0
HPP92_023362 Vanilla planifolia HOM05D000246 ORTHO05D001057 5.6e-06 56.2 86 36.0
HPP92_023370 Vanilla planifolia HOM05D000246 ORTHO05D001057 5.6e-06 56.2 86 36.0
Duzib138G0184 Durio zibethinus HOM05D000246 ORTHO05D001057 7.3e-06 55.8 116 31.0
Migut.B01873 Erythranthe guttata HOM05D000246 ORTHO05D001057 7.3e-06 55.8 97 35.1
PSO063G6329 Papaver somniferum HOM05D000246 ORTHO05D001057 7.3e-06 55.8 97 34.0
TWI36G1377 Tripterygium wilfordii HOM05D000246 ORTHO05D001057 7.3e-06 55.8 89 36.0
ECA236G4511 Erigeron canadensis HOM05D000246 ORTHO05D001057 9.5e-06 55.5 87 41.4
Lsat_1_v5_gn_7_93120 Lactuca sativa HOM05D000246 ORTHO05D001057 9.5e-06 55.5 87 40.2
Lalb_Chr14g0375881 Lupinus albus HOM05D000246 ORTHO05D001057 9.5e-06 55.5 81 42.0
MCO01G350 Micromonas commoda HOM05D000246 ORTHO05D001057 9.5e-06 55.5 89 37.1
Prupe.1G233000 Prunus persica HOM05D000246 ORTHO05D001057 9.5e-06 55.5 89 38.2
Solyc01g095980.3 Solanum lycopersicum HOM05D000246 ORTHO05D001057 9.5e-06 55.5 120 30.0
Sopen01g039700 Solanum pennellii HOM05D000246 ORTHO05D001057 9.5e-06 55.5 120 30.0
Zm00001eb261530 Zea mays HOM05D000246 ORTHO05D001057 9.5e-06 55.5 81 40.7


User provided reference genes

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