Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p096363 Quercus lobata HOM05D007547 ORTHO05D009590 6.1e-39 163.7 84 100.0
QL04p096330 Quercus lobata HOM05D007547 ORTHO05D009590 2.9e-36 154.8 84 95.2
QL04p096133 Quercus lobata HOM05D007547 ORTHO05D009590 5.0e-33 144.1 84 89.3
Aa31LG4G1780 Aethionema arabicum HOM05D007547 ORTHO05D009590 1.2e-26 122.9 77 77.9
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 1.2e-26 122.9 77 81.8
MELO3C026033.2 Cucumis melo HOM05D007547 ORTHO05D009590 1.2e-26 122.9 77 80.5
Medtr2g062800 Medicago truncatula HOM05D007547 ORTHO05D009590 2.0e-26 122.1 77 80.5
Phvul.005G044200 Phaseolus vulgaris HOM05D007547 ORTHO05D009590 2.0e-26 122.1 77 79.2
AT2G21820 Arabidopsis thaliana HOM05D007547 ORTHO05D009590 2.7e-26 121.7 77 76.6
Migut.M01490 Erythranthe guttata HOM05D007547 ORTHO05D009590 3.5e-26 121.3 77 79.2
ClCG04G006620 Citrullus lanatus HOM05D007547 ORTHO05D009590 4.6e-26 120.9 77 79.2
Sp5g34290 Schrenkiella parvula HOM05D007547 ORTHO05D009590 4.6e-26 120.9 77 77.9
Lj3g0009805 Lotus japonicus HOM05D007547 ORTHO05D009590 7.8e-26 120.2 77 77.9
Potri.010G176200 Populus trichocarpa HOM05D007547 ORTHO05D009590 7.8e-26 120.2 77 77.9
AL4G11130 Arabidopsis lyrata HOM05D007547 ORTHO05D009590 1.0e-25 119.8 77 76.6
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 1.0e-25 119.8 74 85.1
Psat1g131000 Pisum sativum HOM05D007547 ORTHO05D009590 1.0e-25 119.8 77 77.9
Glyma.08G160800 Glycine max HOM05D007547 ORTHO05D009590 1.3e-25 119.4 77 76.6
Carub.0004s0086 Capsella rubella HOM05D007547 ORTHO05D009590 1.7e-25 119.0 77 75.3
CARHR072880 Cardamine hirsuta HOM05D007547 ORTHO05D009590 1.7e-25 119.0 77 75.3
Thhalv10019600m.g Eutrema salsugineum HOM05D007547 ORTHO05D009590 1.7e-25 119.0 77 75.3
TAR624G0069 Trochodendron aralioides HOM05D007547 ORTHO05D009590 1.7e-25 119.0 77 77.9
Sed0025991 Sechium edule HOM05D007547 ORTHO05D009590 3.0e-25 118.2 77 75.3
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.9e-25 117.9 77 77.9
TPR.G3626 Trifolium pratense HOM05D007547 ORTHO05D009590 3.9e-25 117.9 77 75.3
A07p27220 Brassica napus HOM05D007547 ORTHO05D009590 8.6e-25 116.7 77 75.3
BraA07t30366Z Brassica rapa HOM05D007547 ORTHO05D009590 8.6e-25 116.7 77 75.3
CDE06G1569 Ceratophyllum demersum HOM05D000146 ORTHO05D000178 1.5e-24 115.9 84 70.2
DCAR_013700 Daucus carota HOM05D007547 ORTHO05D009590 1.5e-24 115.9 77 77.9
Manes.11G079000 Manihot esculenta HOM05D007547 ORTHO05D009590 1.9e-24 115.5 77 76.6
CANSAT56G0291 Cannabis sativa HOM05D007547 ORTHO05D009590 2.5e-24 115.2 77 76.6
CsaV3_4G026690 Cucumis sativus L. HOM05D007547 ORTHO05D009590 2.5e-24 115.2 72 79.2
THA.LOC104808152 Tarenaya hassleriana HOM05D007547 ORTHO05D009590 3.3e-24 114.8 77 75.3
BcaC08g45367 Brassica carinata HOM05D007547 ORTHO05D009590 4.3e-24 114.4 77 74.0
MD05G1241500 Malus domestica HOM05D007547 ORTHO05D009590 4.3e-24 114.4 77 75.3
Nn1g09847 Nelumbo nucifera HOM05D007547 ORTHO05D009590 5.6e-24 114.0 77 75.3
TWI59G1298 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 5.6e-24 114.0 78 78.2
BolC6t38159H Brassica oleracea HOM05D007547 ORTHO05D009590 9.5e-24 113.2 77 72.7
BraA07t31944Z Brassica rapa HOM05D007547 ORTHO05D009590 1.6e-23 112.5 77 70.1
Lalb_Chr25g0284091 Lupinus albus HOM05D007547 ORTHO05D009590 2.8e-23 111.7 77 72.7
Aqoxy1G00763 Aquilegia oxysepala HOM05D007547 ORTHO05D009590 4.7e-23 110.9 77 72.7
BcaC08g47491 Brassica carinata HOM05D007547 ORTHO05D009590 4.7e-23 110.9 77 68.8
C06p53150 Brassica napus HOM05D007547 ORTHO05D009590 4.7e-23 110.9 77 68.8
BolC6t40331H Brassica oleracea HOM05D007547 ORTHO05D009590 4.7e-23 110.9 77 68.8
RcHm_v2.0_Chr5g0022881 Rosa chinensis HOM05D007547 ORTHO05D009590 8.1e-23 110.2 77 71.4
Nitab4.5_0003384g0040 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.8e-22 109.0 78 73.1
FAN16G2958 Fragaria x ananassa HOM05D007547 ORTHO05D009590 2.3e-22 108.6 77 70.1
FAN11G3189 Fragaria x ananassa HOM05D007547 ORTHO05D009590 3.1e-22 108.2 80 67.5
Peaxi162Scf00479g00092 Petunia axillaris HOM05D007547 ORTHO05D009590 3.1e-22 108.2 78 71.8
CSS0011642 Camellia sinensis var. sinensis HOM05D007547 ORTHO05D009590 4.0e-22 107.8 77 67.5
PGSC0003DMG400018766 Solanum tuberosum HOM05D007547 ORTHO05D009590 4.0e-22 107.8 78 74.4
SalBow8G1259 Salvia bowleyana HOM05D007547 ORTHO05D009590 5.2e-22 107.5 82 70.7
PSO541G4573 Papaver somniferum HOM05D007547 ORTHO05D009590 5.8e-21 104.0 86 73.3
Cpa.g.sc118.6 Carica papaya HOM05D007547 ORTHO05D009590 1.7e-20 102.4 78 67.9
unitig_26.g10053 Utricularia gibba HOM05D007547 ORTHO05D009590 2.2e-20 102.1 79 67.1
Solyc03g046380.1 Solanum lycopersicum HOM05D007547 ORTHO05D009590 2.9e-20 101.7 78 70.5
CAN.G497.31 Capsicum annuum HOM05D007547 ORTHO05D009590 3.7e-20 101.3 80 68.8
Sopen03g010530 Solanum pennellii HOM05D007547 ORTHO05D009590 3.7e-20 101.3 78 70.5
Nitab4.5_0001982g0020 Nicotiana tabacum HOM05D007547 ORTHO05D009590 6.4e-20 100.5 78 70.5
Nitab4.5_0009717g0010 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.4e-19 99.4 78 67.9
C06p29990 Brassica napus HOM05D007547 ORTHO05D009590 1.9e-19 99.0 66 74.2
Gorai.009G322400 Gossypium raimondii HOM05D007547 ORTHO05D009590 2.4e-19 98.6 79 65.8
Thecc.10G021200 Theobroma cacao HOM05D007547 ORTHO05D009590 2.4e-19 98.6 80 62.5
Gohir.D05G303200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.2e-19 98.2 79 64.6
Gohir.A06G138100 Gossypium hirsutum HOM05D007547 ORTHO05D009590 4.1e-19 97.8 79 65.8
COL.COLO4_25679 Corchorus olitorius HOM05D007547 ORTHO05D009590 5.4e-19 97.4 78 61.5
Eucgr.F04485 Eucalyptus grandis HOM05D007547 ORTHO05D009590 7.1e-19 97.1 88 60.2
Gohir.A07G180700 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.2e-18 96.3 79 64.6
Gohir.D03G067200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.2e-18 96.3 79 64.6
Lalb_Chr25g0284071 Lupinus albus HOM05D007547 ORTHO05D009590 1.2e-18 96.3 75 68.0
Ah.11g039500 Amaranthus hybridus HOM05D007547 ORTHO05D009590 1.6e-18 95.9 79 67.1
Gorai.008G081200 Gossypium raimondii HOM05D007547 ORTHO05D009590 1.6e-18 95.9 79 65.8
Gohir.A02G145400 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.7e-18 95.1 79 63.3
CDE02G1937 Ceratophyllum demersum HOM05D007547 ORTHO05D009590 3.5e-18 94.7 84 63.1
Gohir.D03G007300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.5e-18 94.7 79 64.6
HPP92_021471 Vanilla planifolia HOM05D007547 ORTHO05D009590 4.6e-18 94.4 79 60.8
Gohir.A05G237600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 6.0e-18 94.0 79 63.3
Gohir.D11G227600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 6.0e-18 94.0 79 63.3
Gohir.A11G192300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.0e-17 93.2 79 63.3
EL10Ac1g02249 Beta vulgaris HOM05D007547 ORTHO05D009590 1.3e-17 92.8 81 66.7
GSVIVG01036687001 Vitis vinifera HOM05D007547 ORTHO05D009590 1.3e-17 92.8 63 71.4
TWI38G1141 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 3.0e-17 91.7 80 62.5
TWI38G2170 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 3.0e-17 91.7 80 62.5
AUR62035430 Chenopodium quinoa HOM05D007547 ORTHO05D009590 3.9e-17 91.3 81 66.7
ECA234G4113 Erigeron canadensis HOM05D007547 ORTHO05D009590 3.9e-17 91.3 87 56.3
PGR031G1160 Punica granatum HOM05D007547 ORTHO05D009590 5.1e-17 90.9 78 61.5
Sc15g0005120 Simmondsia chinensis HOM05D007547 ORTHO05D009590 5.1e-17 90.9 80 65.0
Atru.chr1.6 Acer truncatum HOM05D007547 ORTHO05D009590 6.6e-17 90.5 79 63.3
AUR62035713 Chenopodium quinoa HOM05D007547 ORTHO05D009590 8.6e-17 90.1 81 66.7
Lsat_1_v5_gn_5_102841 Lactuca sativa HOM05D007547 ORTHO05D009590 1.9e-16 89.0 87 56.3
BcaB02g07207 Brassica carinata HOM05D007547 ORTHO05D009590 6.2e-15 84.0 77 62.3
Peaxi162Scf00020g01922 Petunia axillaris HOM05D007547 ORTHO05D009590 1.1e-14 83.2 65 69.2
Ciclev10007105m.g Citrus clementina HOM05D007547 ORTHO05D009590 1.4e-14 82.8 88 56.8
Gohir.A05G304300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.8e-14 82.4 71 60.6
Os08g0385000 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 4.9e-12 74.3 88 50.0
Rhsim04G0026600 Rhododendron simsii HOM05D007547 ORTHO05D009590 6.4e-12 73.9 81 56.8
Os01g0654400 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 8.4e-12 73.6 86 50.0
Zm00001eb055260 Zea mays HOM05D007547 ORTHO05D009590 1.2e-10 69.7 94 45.7
AL2G39720 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.0e-09 66.6 42 76.2
Duzib114G0968 Durio zibethinus HOM05D000021 ORTHO05D000010 5.2e-06 54.3 47 59.6


User provided reference genes

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