Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 5.1e-268 927.2 465 100.0
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 6.8e-188 661.0 425 78.6
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 7.5e-187 657.5 500 70.2
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.3e-186 656.8 463 71.5
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.7e-186 656.4 469 71.0
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 1.8e-185 652.9 464 70.9
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 2.4e-185 652.5 467 70.7
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 2.7e-184 649.0 464 70.5
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 8.6e-183 644.0 469 71.4
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 8.6e-183 644.0 465 69.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.9e-182 642.9 470 70.2
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 9.5e-182 640.6 469 69.7
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.6e-181 639.8 468 70.5
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 1.6e-181 639.8 475 68.6
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 3.6e-181 638.6 462 69.7
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 4.7e-181 638.3 477 68.8
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.0e-180 637.1 477 69.0
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.8e-180 636.3 469 70.8
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.3e-180 636.0 476 69.1
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 5.2e-180 634.8 470 69.8
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 5.2e-180 634.8 462 69.0
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.2e-179 633.6 470 70.0
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.5e-179 633.3 380 79.7
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.0e-179 632.9 399 76.7
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 2.0e-179 632.9 466 69.3
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 2.6e-179 632.5 399 76.9
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 4.4e-179 631.7 473 68.5
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.3e-178 630.2 478 69.5
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 4.9e-178 628.2 399 76.2
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.5e-176 622.1 384 77.6
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.5e-176 622.1 465 68.2
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.5e-176 622.1 423 72.6
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 7.8e-176 620.9 471 68.2
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 1.0e-175 620.5 468 72.4
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.3e-175 619.4 468 69.2
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 3.9e-175 618.6 461 67.5
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 3.9e-175 618.6 485 67.6
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 5.0e-175 618.2 462 69.0
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.1e-174 617.1 484 66.3
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.5e-174 616.7 462 67.7
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.9e-174 616.3 380 76.6
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 2.5e-174 615.9 468 68.2
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.5e-174 615.9 462 66.7
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 3.3e-174 615.5 423 70.7
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 7.3e-174 614.4 461 67.9
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 1.2e-173 613.6 423 71.2
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 8.1e-173 610.9 482 65.6
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 6.8e-172 607.8 461 67.9
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.5e-171 606.7 383 74.9
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 1.7e-170 603.2 471 67.3
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 2.1e-168 596.3 432 69.9
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 3.5e-168 595.5 476 64.5
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 2.3e-167 592.8 464 65.9
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 3.0e-167 592.4 464 65.9
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 5.1e-167 591.7 464 65.5
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 8.6e-167 590.9 464 65.7
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 2.1e-165 586.3 455 66.4
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 2.8e-165 585.9 492 64.6
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 3.6e-165 585.5 380 74.7
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 3.6e-165 585.5 432 69.2
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.1e-164 583.9 380 74.5
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 2.3e-164 582.8 470 64.7
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 8.9e-164 580.9 406 70.7
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.5e-163 580.1 469 63.5
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.0e-163 579.7 463 62.6
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 5.8e-163 578.2 463 63.1
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.7e-162 576.6 482 64.1
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 2.9e-162 575.9 381 74.0
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 4.9e-162 575.1 380 73.7
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 4.9e-162 575.1 422 68.0
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.1e-161 573.9 471 65.0
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.9e-161 573.2 466 63.7
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 2.1e-160 569.7 380 73.7
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 6.0e-160 568.2 469 63.5
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 6.0e-160 568.2 499 61.7
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.0e-159 567.4 389 71.7
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.7e-159 566.6 379 72.3
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 3.9e-159 565.5 392 71.7
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 8.1e-157 557.8 478 60.7
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.4e-156 557.0 423 64.3
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 3.1e-156 555.8 333 78.4
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.0e-155 553.1 426 68.3
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 2.0e-155 553.1 391 70.6
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 5.8e-155 551.6 334 77.2
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.9e-154 549.3 463 61.6
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 3.5e-152 542.3 430 64.7
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 3.3e-150 535.8 435 62.5
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 3.3e-150 535.8 522 55.9
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 2.8e-149 532.7 368 67.1
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 1.1e-145 520.8 489 56.6
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.4e-145 519.6 424 60.4
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 2.7e-144 516.2 358 79.9
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 6.4e-138 495.0 380 67.1
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 8.4e-138 494.6 393 63.9
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 6.7e-135 485.0 318 72.3
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.1e-134 484.2 430 60.0
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.2e-131 474.2 396 61.1
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 7.6e-131 471.5 422 57.6
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 8.4e-130 468.0 424 58.7
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 2.7e-128 463.0 280 78.6
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.9e-127 459.1 464 55.6
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.5e-126 457.2 428 58.4
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 6.9e-124 448.4 357 60.8
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 3.0e-119 433.0 468 54.1
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 2.8e-117 426.4 353 66.0
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 7.9e-112 408.3 424 56.4
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.6e-107 393.3 273 70.7
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.5e-94 350.9 208 79.8
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.1e-92 343.2 307 59.9
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.9e-90 336.7 395 45.6
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.7e-88 330.1 212 72.6
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 3.6e-88 329.7 361 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.7e-83 313.5 362 45.3
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.0e-79 301.6 179 81.0
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 4.0e-79 299.7 255 60.4
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.4e-78 296.2 255 60.0
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 2.4e-76 290.4 261 59.4
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.0e-75 287.3 171 81.9
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.0e-74 285.0 257 58.4
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 1.9e-73 280.8 279 49.1
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 4.7e-72 276.2 255 58.8
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 6.8e-63 245.7 173 69.4
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.1e-57 228.4 297 43.4
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 9.5e-57 225.3 227 57.3
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 6.4e-45 186.0 91 94.5
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 1.5e-41 174.9 237 45.1
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 2.8e-40 170.6 95 83.2
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.2e-30 138.7 140 56.4
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 2.2e-29 134.4 75 82.7
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.4e-29 132.9 236 39.0
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 1.2e-27 128.6 111 59.5
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 6.0e-27 126.3 364 32.4
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 2.9e-21 107.5 67 77.6
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.4e-20 105.1 130 45.4
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 5.6e-17 93.2 60 73.3
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 2.0e-14 84.7 63 68.3
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 3.4e-14 84.0 356 25.8
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 9.3e-12 75.9 71 59.2
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 5.1e-10 70.1 81 42.0
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 2.8e-08 64.3 38 68.4
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 4.8e-08 63.5 32 93.8
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 1.8e-07 61.6 37 70.3


User provided reference genes

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