Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 3.9e-268 927.5 468 100.0
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 3.7e-218 761.5 469 83.4
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 2.8e-210 735.3 468 79.7
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 8.6e-207 723.8 471 78.1
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 2.5e-206 722.2 471 78.8
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 7.3e-206 720.7 471 77.7
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 9.5e-206 720.3 475 77.7
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.6e-205 719.5 480 76.2
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.8e-204 716.1 469 76.8
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 7.5e-203 710.7 477 75.3
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 9.8e-203 710.3 477 75.5
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.7e-202 709.5 466 78.3
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.4e-201 706.4 464 78.0
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 1.2e-200 703.4 469 76.8
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.6e-200 703.0 482 74.1
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.6e-200 703.0 473 75.1
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 1.7e-199 699.5 460 76.5
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 2.3e-199 699.1 470 75.7
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 3.0e-199 698.7 467 75.6
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 3.0e-199 698.7 443 80.4
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.1e-198 696.8 460 76.1
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.5e-198 696.4 469 74.4
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.9e-198 696.0 468 73.7
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 4.3e-198 694.9 468 73.3
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 1.8e-196 689.5 465 75.9
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 3.1e-196 688.7 465 75.7
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.1e-193 680.2 468 73.9
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 7.0e-193 677.6 465 73.5
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 1.6e-192 676.4 456 76.3
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 3.0e-191 672.2 436 78.4
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 5.1e-191 671.4 449 75.3
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 3.6e-189 665.2 465 72.0
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.4e-188 663.3 449 74.6
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 5.2e-188 661.4 464 73.7
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 4.4e-187 658.3 462 72.5
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 3.2e-185 652.1 467 71.9
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 3.2e-185 652.1 417 78.4
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 5.4e-185 651.4 465 69.2
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 7.1e-185 651.0 468 68.8
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 7.8e-184 647.5 465 68.4
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.7e-183 646.4 433 75.8
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 3.0e-183 645.6 465 70.5
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 1.1e-182 643.7 416 76.2
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 4.3e-182 641.7 650 55.5
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 4.3e-182 641.7 453 69.5
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 5.6e-182 641.3 440 74.8
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 2.8e-181 639.0 464 69.0
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.3e-178 630.2 439 71.3
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 6.4e-178 627.9 467 67.2
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 1.9e-177 626.3 439 70.6
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 1.9e-177 626.3 439 70.6
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 3.0e-175 619.0 457 68.3
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 5.1e-175 618.2 486 66.5
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 3.3e-174 615.5 447 69.4
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 2.6e-171 605.9 457 66.1
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.7e-170 603.2 487 66.9
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.4e-169 600.1 477 67.1
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.2e-169 598.6 470 67.4
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 9.3e-169 597.4 426 72.5
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.0e-167 594.0 569 56.2
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.9e-166 589.7 417 67.6
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.4e-161 573.5 385 75.3
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 6.0e-160 568.2 467 64.9
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 1.3e-159 567.0 381 74.0
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 8.7e-159 564.3 462 64.1
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.5e-158 563.5 376 75.5
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 2.0e-155 553.1 450 65.3
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.7e-154 550.1 449 64.6
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.1e-153 547.4 396 67.9
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 7.1e-153 544.7 372 74.7
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 6.7e-151 538.1 457 63.5
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 4.3e-150 535.4 480 61.2
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 9.6e-150 534.3 580 51.6
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.4e-147 525.8 462 61.7
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 5.8e-147 525.0 368 72.6
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 4.6e-144 515.4 444 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 2.2e-138 496.5 436 56.4
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 3.8e-138 495.7 488 58.2
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 9.4e-137 491.1 350 68.6
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 8.8e-135 484.6 443 55.8
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 2.5e-134 483.0 475 56.6
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 9.1e-132 474.6 373 66.8
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 3.8e-130 469.2 347 69.7
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.4e-129 467.2 451 53.9
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 9.7e-126 454.5 321 72.9
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 9.7e-126 454.5 325 70.5
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.6e-112 410.6 321 67.0
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 2.2e-109 400.2 331 66.2
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 2.4e-100 370.2 272 68.8
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 5.9e-99 365.5 463 44.7
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.8e-95 354.0 318 60.7
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 9.5e-89 331.6 222 73.0
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 2.9e-85 320.1 229 72.9
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 4.1e-84 316.2 445 39.6
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 2.0e-78 297.4 467 38.3
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 7.8e-75 285.4 171 83.0
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 6.2e-64 249.2 229 56.8
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.8e-56 223.8 153 73.9
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 5.8e-54 216.1 176 65.3
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 2.8e-48 197.2 138 66.7
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 3.4e-46 190.3 443 30.9
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 6.4e-45 186.0 114 79.8
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 1.1e-41 175.3 101 85.1
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 9.6e-41 172.2 104 80.8
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.2e-38 165.2 100 84.0
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.2e-38 165.2 100 84.0
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 4.5e-38 163.3 107 74.8
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 8.7e-34 149.1 75 92.0
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.4e-20 105.1 62 77.4
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 5.5e-12 76.6 48 64.6
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 1.6e-11 75.1 205 24.9
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 3.3e-09 67.4 46 73.9
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 4.4e-09 67.0 47 78.7
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 2.2e-08 64.7 42 76.2
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 3.1e-07 60.8 79 46.8


User provided reference genes

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