Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p088027 Quercus lobata HOM05D037085 ORTHO05D009162 2.8e-128 461.8 217 100.0
QL04p088276 Quercus lobata HOM05D037085 ORTHO05D009162 5.2e-90 334.7 198 83.8
QL04p088760 Quercus lobata HOM05D037085 ORTHO05D336974 2.2e-56 223.0 198 61.1
QL04p088233 Quercus lobata HOM05D027036 ORTHO05D337258 1.1e-20 104.4 71 73.2
QL04p088484 Quercus lobata HOM05D007250 ORTHO05D009162 9.7e-12 74.7 57 66.7
QL04p088943 Quercus lobata HOM05D007250 ORTHO05D009162 9.7e-12 74.7 57 66.7
CiPaw.11G061700 Carya illinoinensis HOM05D007250 ORTHO05D009162 3.7e-11 72.8 57 59.6
Haze_07815 Corylus avellana HOM05D007250 ORTHO05D009162 5.3e-10 68.9 57 57.9
Manes.06G175800 Manihot esculenta HOM05D007250 ORTHO05D009162 5.3e-10 68.9 54 63.0
GSVIVG01036780001 Vitis vinifera HOM05D007250 ORTHO05D009162 5.3e-10 68.9 57 57.9
Ca_03591_v3 Cicer arietinum L. HOM05D007250 ORTHO05D009162 9.1e-10 68.2 68 44.1
arahy.Tifrunner.gnm1.ann1.3NS56Y Arachis hypogaea HOM05D007250 ORTHO05D009162 1.5e-09 67.4 68 47.1
CAN.G492.76 Capsicum annuum HOM05D007250 ORTHO05D009162 1.5e-09 67.4 57 54.4
Cpa.g.sc34.15 Carica papaya HOM05D007250 ORTHO05D009162 1.5e-09 67.4 57 57.9
Ciclev10005586m.g Citrus clementina HOM05D007250 ORTHO05D009162 1.5e-09 67.4 54 59.3
Glyma.15G260800 Glycine max HOM05D007250 ORTHO05D009162 1.5e-09 67.4 54 53.7
MSTRG.16100 Avicennia marina HOM05D007250 ORTHO05D009162 2.0e-09 67.0 57 54.4
CSS0017513 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 2.0e-09 67.0 54 55.6
CSS0024774 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 2.0e-09 67.0 54 55.6
Potri.007G069400 Populus trichocarpa HOM05D007250 ORTHO05D009162 2.0e-09 67.0 56 58.9
Sopen10g001520 Solanum pennellii HOM05D007250 ORTHO05D009162 2.0e-09 67.0 57 54.4
Lalb_Chr25g0284601 Lupinus albus HOM05D007250 ORTHO05D009162 2.6e-09 66.6 68 44.1
Medtr1g060720 Medicago truncatula HOM05D007250 ORTHO05D009162 2.6e-09 66.6 68 45.6
Solyc10g005540.4 Solanum lycopersicum HOM05D007250 ORTHO05D009162 2.6e-09 66.6 57 52.6
Sed0012120 Sechium edule HOM05D007250 ORTHO05D009162 3.4e-09 66.2 54 53.7
MD05G1040700 Malus domestica HOM05D007250 ORTHO05D009162 4.5e-09 65.9 54 55.6
Hund20100 Selenicereus undatus HOM05D007250 ORTHO05D009162 4.5e-09 65.9 57 54.4
ClCG02G018630 Citrullus lanatus HOM05D007250 ORTHO05D009162 5.9e-09 65.5 54 57.4
COL.COLO4_32252 Corchorus olitorius HOM05D007250 ORTHO05D009162 5.9e-09 65.5 57 54.4
Oeu034977.1 Olea europaea HOM05D007250 ORTHO05D009162 5.9e-09 65.5 54 51.9
Gohir.A13G123300 Gossypium hirsutum HOM05D007250 ORTHO05D009162 7.7e-09 65.1 54 55.6
Gohir.D13G127200 Gossypium hirsutum HOM05D007250 ORTHO05D009162 7.7e-09 65.1 54 55.6
Gorai.013G142400 Gossypium raimondii HOM05D007250 ORTHO05D009162 7.7e-09 65.1 54 55.6
Nitab4.5_0003777g0030 Nicotiana tabacum HOM05D007250 ORTHO05D009162 7.7e-09 65.1 57 54.4
Nitab4.5_0008957g0010 Nicotiana tabacum HOM05D007250 ORTHO05D009162 7.7e-09 65.1 57 54.4
Atru.chr1.107 Acer truncatum HOM05D007250 ORTHO05D009162 1.0e-08 64.7 70 45.7
Psat1g013800 Pisum sativum HOM05D007250 ORTHO05D009162 1.0e-08 64.7 68 44.1
Sabra07G0056900 Salix brachista HOM05D007250 ORTHO05D009162 1.0e-08 64.7 57 54.4
PGSC0003DMG400011276 Solanum tuberosum HOM05D007250 ORTHO05D009162 1.0e-08 64.7 57 52.6
Peaxi162Scf00114g00116 Petunia axillaris HOM05D007250 ORTHO05D009162 1.3e-08 64.3 54 53.7
Phvul.005G050100 Phaseolus vulgaris HOM05D007250 ORTHO05D009162 1.3e-08 64.3 54 51.9
CsaV3_6G013550 Cucumis sativus L. HOM05D007250 ORTHO05D009162 1.7e-08 63.9 54 55.6
Lsat_1_v5_gn_7_75520 Lactuca sativa HOM05D007250 ORTHO05D009162 2.2e-08 63.5 54 53.7
Lj3g0020784 Lotus japonicus HOM05D007250 ORTHO05D009162 2.2e-08 63.5 68 44.1
Duzib213G0161 Durio zibethinus HOM05D007250 ORTHO05D009162 2.9e-08 63.2 54 55.6
Prupe.8G055300 Prunus persica HOM05D007250 ORTHO05D009162 5.0e-08 62.4 54 53.7
Rhsim06G0242100 Rhododendron simsii HOM05D007250 ORTHO05D009162 5.0e-08 62.4 54 50.0
Migut.M01529 Erythranthe guttata HOM05D007250 ORTHO05D009162 6.5e-08 62.0 57 50.9
Thecc.07G179900 Theobroma cacao HOM05D007250 ORTHO05D009162 6.5e-08 62.0 54 53.7
TWI38G0063 Tripterygium wilfordii HOM05D007250 ORTHO05D009162 6.5e-08 62.0 57 49.1
HanXRQChr05g0160551 Helianthus annuus HOM05D007250 ORTHO05D009162 8.5e-08 61.6 54 51.9
PGR031G0704 Punica granatum HOM05D007250 ORTHO05D009162 8.5e-08 61.6 53 50.9
TAR627G0140 Trochodendron aralioides HOM05D007250 ORTHO05D009162 8.5e-08 61.6 54 51.9
Nn3g20174 Nelumbo nucifera HOM05D007250 ORTHO05D009162 1.1e-07 61.2 54 50.0
RcHm_v2.0_Chr6g0272151 Rosa chinensis HOM05D007250 ORTHO05D009162 1.9e-07 60.5 54 53.7
unitig_748.g7850 Utricularia gibba HOM05D007250 ORTHO05D001497 2.5e-07 60.1 57 49.1
vmacro11701 Vaccinium macrocarpon HOM05D007250 ORTHO05D009162 2.5e-07 60.1 54 46.3
AUR62018167 Chenopodium quinoa HOM05D007250 ORTHO05D009162 3.2e-07 59.7 57 47.4
Eucgr.F04459 Eucalyptus grandis HOM05D007250 ORTHO05D009162 4.2e-07 59.3 57 45.6
PSO541G5100 Papaver somniferum HOM05D007250 ORTHO05D009162 4.2e-07 59.3 54 48.1
Aa31LG7G990 Aethionema arabicum HOM05D007250 ORTHO05D009162 5.5e-07 58.9 67 43.3
A09p60900 Brassica napus HOM05D007250 ORTHO05D009162 7.2e-07 58.5 54 51.9
BraA09t41463Z Brassica rapa HOM05D007250 ORTHO05D009162 7.2e-07 58.5 54 51.9
Dinv19589 Davidia involucrata HOM05D007250 ORTHO05D009162 7.2e-07 58.5 46 58.7
Thhalv10008448m.g Eutrema salsugineum HOM05D007250 ORTHO05D009162 7.2e-07 58.5 54 48.1
Carub.0001s1619 Capsella rubella HOM05D007250 ORTHO05D009162 1.2e-06 57.8 60 46.7
AT1G16445 Arabidopsis thaliana HOM05D007250 ORTHO05D009162 1.6e-06 57.4 69 43.5
C08p44490 Brassica napus HOM05D007250 ORTHO05D009162 1.6e-06 57.4 54 50.0
BolC8t51991H Brassica oleracea HOM05D007250 ORTHO05D009162 1.6e-06 57.4 54 50.0
CDE01G0022 Ceratophyllum demersum HOM05D007250 ORTHO05D009162 2.1e-06 57.0 53 49.1
FAN24G3506 Fragaria x ananassa HOM05D007250 ORTHO05D009162 2.1e-06 57.0 54 48.1
Lj2A15T78 Lonicera japonica HOM05D007250 ORTHO05D009162 2.1e-06 57.0 67 41.8
Sp1g14600 Schrenkiella parvula HOM05D007250 ORTHO05D009162 2.1e-06 57.0 54 48.1
AUR62042431 Chenopodium quinoa HOM05D007250 ORTHO05D009162 2.7e-06 56.6 57 45.6
CARHR016920 Cardamine hirsuta HOM05D007250 ORTHO05D009162 4.7e-06 55.8 54 48.1
Hma1.2p1_0151F.1_g067310 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 4.7e-06 55.8 69 46.4
AL1G28580 Arabidopsis lyrata HOM05D007250 ORTHO05D009162 7.9e-06 55.1 54 48.1
CANSAT56G4154 Cannabis sativa HOM05D007250 ORTHO05D009162 7.9e-06 55.1 54 46.3


User provided reference genes

Program Settings