Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 2.2e-259 898.7 537 100.0
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 2.8e-209 732.3 562 80.2
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 7.1e-165 584.7 561 65.4
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.9e-150 536.2 556 60.6
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 6.1e-148 528.5 581 56.5
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.4e-144 516.5 534 64.4
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.1e-144 516.2 564 62.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 4.5e-143 512.3 568 58.8
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.7e-142 510.4 566 58.8
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 2.2e-142 510.0 546 61.4
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 2.9e-142 509.6 526 57.2
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 6.5e-142 508.4 582 60.8
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 8.5e-142 508.1 566 61.0
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 8.5e-142 508.1 568 62.3
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 7.2e-141 505.0 560 61.8
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.1e-140 503.4 581 57.8
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 4.7e-140 502.3 609 58.0
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 6.1e-140 501.9 580 57.4
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 7.9e-140 501.5 567 60.3
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 7.9e-140 501.5 551 59.0
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.0e-139 499.6 561 61.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.0e-139 499.6 556 66.7
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 3.9e-139 499.2 582 56.4
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.8e-137 493.0 564 60.5
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 8.2e-137 491.5 561 59.4
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 7.0e-136 488.4 556 51.6
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.6e-135 487.3 582 60.1
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.6e-135 487.3 538 62.1
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.3e-134 484.2 585 56.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.2e-134 483.4 566 61.5
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 2.9e-134 483.0 525 55.8
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.0e-134 482.3 543 57.8
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.5e-133 480.7 549 59.2
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 5.5e-133 478.8 549 59.2
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 5.5e-133 478.8 578 54.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-132 476.9 540 58.9
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 6.1e-132 475.3 534 54.5
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.4e-131 474.2 578 52.8
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.8e-131 473.8 556 57.4
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 4.0e-131 472.6 544 55.7
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 8.8e-131 471.5 547 52.8
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 5.7e-130 468.8 546 55.9
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 6.3e-129 465.3 555 60.9
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 5.3e-128 462.2 562 58.5
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 7.0e-128 461.8 545 55.0
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 7.0e-128 461.8 568 50.5
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 9.1e-128 461.5 558 52.5
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 2.7e-127 459.9 550 53.6
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 4.5e-127 459.1 556 56.5
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 5.0e-126 455.7 551 53.4
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 5.0e-126 455.7 574 51.7
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 6.5e-126 455.3 561 57.8
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.1e-125 454.5 547 53.0
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.9e-125 453.8 549 51.7
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.9e-125 453.8 569 53.8
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 9.4e-125 451.4 549 55.2
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 9.4e-125 451.4 549 55.2
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 2.7e-124 449.9 560 58.9
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.7e-124 449.9 531 52.9
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 6.1e-124 448.7 556 54.3
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 6.1e-124 448.7 524 51.3
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.4e-123 447.6 559 55.8
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 6.8e-123 445.3 557 51.0
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 6.8e-123 445.3 562 56.0
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 8.8e-123 444.9 563 56.5
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.8e-123 444.9 564 56.7
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.2e-122 444.5 558 52.5
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.5e-122 444.1 588 53.4
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.4e-122 442.6 562 56.0
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 1.3e-121 441.0 541 53.0
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 1.3e-121 441.0 528 50.6
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 8.3e-121 438.3 552 52.5
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 3.8e-118 429.5 585 58.3
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 4.2e-117 426.0 560 50.7
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 4.2e-117 426.0 581 53.2
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 8.0e-116 421.8 561 49.0
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.6e-114 416.8 546 51.8
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 9.8e-114 414.8 579 53.9
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 6.3e-113 412.1 526 51.5
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.4e-112 410.2 563 55.2
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 5.4e-112 409.1 509 51.9
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.0e-112 408.7 573 45.5
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.0e-110 404.8 551 50.1
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.3e-110 403.7 534 54.9
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 5.6e-109 399.1 561 52.6
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 2.3e-107 393.7 536 48.7
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.5e-106 391.0 554 51.8
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 5.4e-104 382.5 562 47.3
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 3.0e-102 376.7 576 49.0
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 8.6e-102 375.2 526 50.6
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.1e-101 374.8 570 49.8
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.1e-101 374.8 315 65.1
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.9e-101 374.0 569 51.7
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.9e-101 374.0 569 51.7
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 2.5e-101 373.6 577 45.1
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 3.6e-100 369.8 560 50.4
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.6e-100 369.8 545 44.2
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 4.7e-100 369.4 285 69.1
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.4e-99 367.9 557 50.6
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 3.1e-99 366.7 555 47.7
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 4.0e-99 366.3 240 75.0
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 8.9e-99 365.2 549 50.1
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.1e-96 358.2 554 49.3
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 8.6e-94 348.6 570 45.6
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 8.6e-94 348.6 570 45.6
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.1e-91 340.1 572 43.7
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 9.8e-90 335.1 552 44.7
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 2.2e-89 334.0 555 49.0
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.4e-88 331.3 560 45.2
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.4e-88 330.5 557 47.0
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-87 328.2 508 41.5
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.6e-87 327.8 508 41.7
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.3e-86 324.7 508 41.7
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.3e-86 323.9 552 43.7
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 3.0e-86 323.6 467 47.5
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 9.5e-85 318.5 667 39.0
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.2e-83 312.8 511 42.3
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 3.4e-82 310.1 466 54.7
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.7e-79 300.4 417 56.4
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 5.6e-77 292.7 537 43.2
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 3.4e-74 283.5 271 54.6
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.3e-70 271.6 563 41.6
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.1e-60 235.7 554 36.5
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 5.3e-59 233.0 313 45.7
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 4.5e-58 229.9 376 51.3
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 4.9e-57 226.5 565 39.8
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 3.5e-55 220.3 311 43.4
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 3.7e-52 210.3 303 39.9
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 6.2e-52 209.5 511 35.6
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.6e-50 202.6 243 49.8
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 4.1e-43 180.3 173 58.4
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.5e-42 178.3 146 65.1
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 1.6e-39 168.3 147 63.3
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.6e-39 166.8 122 71.3
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 2.5e-37 161.0 246 43.1
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 7.4e-37 159.5 265 36.2
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 9.1e-27 125.9 100 70.0
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 5.9e-26 123.2 106 62.3
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.0e-25 120.2 319 52.0
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 6.1e-23 113.2 99 63.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.8e-20 104.4 74 68.9
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.4e-19 101.3 359 30.6
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-18 97.4 102 53.9
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.5e-18 97.1 303 31.0
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-13 81.6 162 38.9
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 2.6e-13 81.3 70 65.7
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.7e-12 77.4 333 28.8
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.2e-12 76.3 81 53.1
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.8e-11 75.1 60 70.0
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-10 72.4 88 48.9
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-10 71.6 84 51.2
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.8e-09 67.4 80 47.5
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.8e-09 67.4 109 42.2
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 5.0e-09 67.0 41 75.6
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 8.5e-09 66.2 80 45.0
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.1e-08 65.9 72 48.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.5e-08 63.5 111 38.7


User provided reference genes

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