Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p081705 Quercus lobata HOM05D002350 ORTHO05D000091 1.2e-65 253.1 126 100.0
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 1.5e-36 156.4 82 97.6
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 2.2e-24 115.9 93 66.7
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.4e-23 113.2 93 67.7
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 1.9e-23 112.8 94 63.8
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 2.4e-23 112.5 94 61.7
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 5.4e-23 111.3 94 61.7
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 9.3e-23 110.5 94 62.8
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 1.2e-22 110.2 93 67.7
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.6e-22 109.8 93 65.6
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 6.0e-22 107.8 94 58.5
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 6.0e-22 107.8 94 57.4
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 1.0e-21 107.1 94 57.4
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 1.0e-21 107.1 94 61.7
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.3e-21 106.7 97 59.8
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 3.0e-21 105.5 94 58.5
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 3.0e-21 105.5 94 58.5
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 3.0e-21 105.5 94 58.5
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 3.0e-21 105.5 94 57.4
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 5.1e-21 104.8 94 57.4
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 5.1e-21 104.8 93 62.4
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 5.1e-21 104.8 82 67.1
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 8.7e-21 104.0 94 57.4
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 8.7e-21 104.0 95 60.0
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 1.9e-20 102.8 94 61.7
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 5.6e-20 101.3 115 49.6
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 9.6e-20 100.5 94 56.4
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 9.6e-20 100.5 110 52.7
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 54.3
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 54.3
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 54.3
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 54.3
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 54.3
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 54.3
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 58.5
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 56.4
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 1.3e-19 100.1 94 53.2
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 2.1e-19 99.4 93 58.1
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 2.8e-19 99.0 94 54.3
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 3.6e-19 98.6 93 57.0
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 3.6e-19 98.6 94 56.4
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 4.8e-19 98.2 104 52.9
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 4.8e-19 98.2 94 56.4
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 1.1e-18 97.1 98 53.1
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.1e-18 97.1 94 53.2
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-18 97.1 94 54.3
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 1.1e-18 97.1 94 54.3
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 1.1e-18 97.1 94 54.3
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 1.1e-18 97.1 96 52.1
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 1.4e-18 96.7 94 55.3
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 1.4e-18 96.7 94 54.3
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 1.4e-18 96.7 94 55.3
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.8e-18 96.3 96 54.2
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 2.4e-18 95.9 94 54.3
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 3.1e-18 95.5 94 53.2
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 3.1e-18 95.5 94 53.2
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.1e-18 95.5 94 56.4
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.1e-18 95.5 94 56.4
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 3.1e-18 95.5 93 57.0
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 4.0e-18 95.1 92 55.4
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 5.3e-18 94.7 94 53.2
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.3e-18 94.7 94 55.3
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 5.3e-18 94.7 94 55.3
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 6.9e-18 94.4 94 53.2
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 6.9e-18 94.4 95 53.7
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.2e-17 93.6 94 52.1
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.2e-17 93.6 94 54.3
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 1.2e-17 93.6 94 53.2
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 1.2e-17 93.6 94 53.2
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 1.2e-17 93.6 83 57.8
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 1.5e-17 93.2 94 53.2
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 1.5e-17 93.2 95 55.8
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.5e-17 93.2 94 54.3
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 1.5e-17 93.2 95 53.7
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 2.0e-17 92.8 94 53.2
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 3.4e-17 92.0 94 51.1
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 3.4e-17 92.0 86 55.8
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 3.4e-17 92.0 94 55.3
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 4.4e-17 91.7 94 53.2
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 4.4e-17 91.7 94 54.3
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 4.4e-17 91.7 94 53.2
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 7.6e-17 90.9 93 54.8
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 7.6e-17 90.9 94 55.3
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 9.9e-17 90.5 94 52.1
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 9.9e-17 90.5 97 49.5
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 9.9e-17 90.5 94 51.1
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 9.9e-17 90.5 94 53.2
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 1.3e-16 90.1 94 53.2
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 1.7e-16 89.7 82 57.3
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 4.9e-16 88.2 94 48.9
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 4.9e-16 88.2 92 52.2
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 4.9e-16 88.2 94 50.0
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 6.4e-16 87.8 94 48.9
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 6.4e-16 87.8 94 48.9
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 6.4e-16 87.8 94 52.1
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 8.4e-16 87.4 94 51.1
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 8.4e-16 87.4 81 56.8
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 8.4e-16 87.4 95 51.6
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-15 87.0 94 51.1
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 1.1e-15 87.0 94 51.1
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.4e-15 86.7 94 53.2
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 1.4e-15 86.7 99 48.5
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 1.4e-15 86.7 95 50.5
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 2.4e-15 85.9 89 53.9
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 2.4e-15 85.9 89 55.1
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 3.2e-15 85.5 95 48.4
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 3.2e-15 85.5 102 50.0
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 5.4e-15 84.7 95 49.5
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 7.1e-15 84.3 95 48.4
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 9.3e-15 84.0 95 50.5
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.2e-14 83.6 97 47.4
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 2.1e-14 82.8 94 46.8
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 2.7e-14 82.4 100 45.0
Sabra06G0125300 Salix brachista HOM05D002350 ORTHO05D000091 3.5e-14 82.0 87 55.2
Peaxi162Scf00824g00113 Petunia axillaris HOM05D002350 ORTHO05D000091 4.6e-14 81.6 93 50.5
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 7.9e-14 80.9 94 46.8
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 7.9e-14 80.9 95 46.3
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 1.3e-13 80.1 80 51.2
Lj4P404T2 Lonicera japonica HOM05D002350 ORTHO05D000091 2.3e-13 79.3 84 48.8
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 2.3e-13 79.3 91 46.2
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 3.9e-13 78.6 100 45.0
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 5.1e-13 78.2 104 45.2
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 6.6e-13 77.8 94 46.8
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 8.7e-13 77.4 98 43.9
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 1.1e-12 77.0 101 40.6
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 1.1e-12 77.0 93 47.3
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 2.5e-12 75.9 83 49.4
RcHm_v2.0_Chr2g0091671 Rosa chinensis HOM05D002350 ORTHO05D000091 2.5e-12 75.9 97 46.4
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 3.3e-12 75.5 81 50.6
DCAR_018379 Daucus carota HOM05D002350 ORTHO05D000091 4.3e-12 75.1 94 42.6
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 4.3e-12 75.1 96 42.7
Nitab4.5_0000165g0050 Nicotiana tabacum HOM05D002350 ORTHO05D000091 5.6e-12 74.7 82 51.2
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 1.3e-11 73.6 51 68.6
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 1.6e-11 73.2 93 45.2
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 1.6e-11 73.2 74 58.1
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 2.1e-11 72.8 116 42.2
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 2.8e-11 72.4 88 46.6
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 3.6e-11 72.0 88 45.5
Nitab4.5_0001354g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 3.6e-11 72.0 80 51.2
MBI04_g40930_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 4.8e-11 71.6 105 43.8
RcHm_v2.0_Chr2g0091721 Rosa chinensis HOM05D002350 ORTHO05D000091 6.2e-11 71.2 83 48.2
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 8.1e-11 70.9 95 42.1
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 8.1e-11 70.9 95 42.1
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.1e-10 70.5 79 46.8
CAN.G160.38 Capsicum annuum HOM05D002350 ORTHO05D000091 1.4e-10 70.1 79 50.6
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 3.1e-10 68.9 87 42.5
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 4.0e-10 68.6 90 43.3
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 5.3e-10 68.2 97 40.2
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 6.9e-10 67.8 88 44.3
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 9.0e-10 67.4 51 62.7
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 9.0e-10 67.4 97 42.3
SEGI_05646 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 2.0e-09 66.2 79 45.6
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 2.6e-09 65.9 88 46.6
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 4.5e-09 65.1 88 40.9
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 5.8e-09 64.7 85 44.7
BolC8t51797H Brassica oleracea HOM05D002350 ORTHO05D000091 3.8e-08 62.0 66 50.0
A01p21050 Brassica napus HOM05D002350 ORTHO05D000091 1.1e-07 60.5 50 60.0
BraA09t40056Z Brassica rapa HOM05D002350 ORTHO05D000091 1.1e-07 60.5 50 60.0
MBI04_g17297_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.4e-07 60.1 97 41.2
Aqoxy6G02290 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.9e-07 59.7 43 67.4
A01p33760 Brassica napus HOM05D002350 ORTHO05D000091 1.9e-07 59.7 84 44.0
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 5.5e-07 58.2 115 35.7
Mapoly0048s0033 Marchantia polymorpha HOM05D002350 ORTHO05D000091 7.9e-06 54.3 89 38.2


User provided reference genes

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