Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.1e-75 286.6 144 100.0
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.4e-11 73.6 66 60.6
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 4.2e-11 72.0 65 63.1
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 7.1e-11 71.2 65 56.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 6.0e-10 68.2 67 58.2
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 6.0e-10 68.2 61 60.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 1.8e-09 66.6 60 60.0
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 3.0e-09 65.9 66 53.0
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 3.0e-09 65.9 62 56.5
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 3.9e-09 65.5 62 59.7
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 5.1e-09 65.1 61 60.7
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 6.7e-09 64.7 60 60.0
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 6.7e-09 64.7 71 53.5
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 8.7e-09 64.3 60 60.0
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.1e-08 63.9 62 54.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 1.5e-08 63.5 60 55.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.5e-08 63.5 60 55.0
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.5e-08 63.5 60 55.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.5e-08 63.5 60 55.0
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.5e-08 63.5 60 58.3
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 1.5e-08 63.5 86 40.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.9e-08 63.2 61 54.1
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.5e-08 62.8 58 56.9
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.5e-08 62.8 83 47.0
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 2.5e-08 62.8 60 58.3
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 2.5e-08 62.8 60 58.3
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 3.3e-08 62.4 59 55.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 3.3e-08 62.4 77 46.8
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.3e-08 62.0 65 52.3
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 4.3e-08 62.0 62 56.5
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 4.3e-08 62.0 59 55.9
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 5.6e-08 61.6 66 51.5
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 5.6e-08 61.6 60 56.7
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 7.4e-08 61.2 60 58.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 7.4e-08 61.2 60 55.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 9.6e-08 60.8 60 56.7
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 9.6e-08 60.8 60 56.7
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 1.3e-07 60.5 57 57.9
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.6e-07 60.1 63 50.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.6e-07 60.1 58 51.7
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.6e-07 60.1 61 52.5
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 1.6e-07 60.1 59 54.2
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.6e-07 60.1 61 52.5
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 1.6e-07 60.1 63 50.8
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.1e-07 59.7 60 56.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 2.1e-07 59.7 60 56.7
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 2.8e-07 59.3 59 55.9
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 2.8e-07 59.3 60 55.0
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 2.8e-07 59.3 61 50.8
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 3.7e-07 58.9 60 51.7
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 3.7e-07 58.9 89 42.7
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 3.7e-07 58.9 89 42.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 3.7e-07 58.9 89 42.7
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 3.7e-07 58.9 89 42.7
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 4.8e-07 58.5 60 51.7
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 4.8e-07 58.5 57 54.4
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 6.2e-07 58.2 60 53.3
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 8.1e-07 57.8 57 56.1
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 8.1e-07 57.8 57 56.1
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 8.1e-07 57.8 60 53.3
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 8.1e-07 57.8 62 46.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.1e-06 57.4 60 50.0
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.1e-06 57.4 60 50.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.8e-06 56.6 49 61.2
QL02p013226 Quercus lobata HOM05D000044 ORTHO05D004085 1.8e-06 56.6 35 80.0
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 2.4e-06 56.2 55 52.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 2.4e-06 56.2 60 48.3
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 2.4e-06 56.2 60 48.3
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 3.1e-06 55.8 60 48.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 3.1e-06 55.8 62 53.2
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 3.1e-06 55.8 62 46.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 4.0e-06 55.5 58 51.7
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 5.3e-06 55.1 77 46.8
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 5.3e-06 55.1 60 51.7
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 5.3e-06 55.1 72 40.3
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 5.3e-06 55.1 60 48.3
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 6.9e-06 54.7 66 48.5
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 9.0e-06 54.3 60 46.7


User provided reference genes

Program Settings