Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1558.1 839 100.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1550.0 839 99.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1216.1 842 79.0
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 0.0e+00 1214.9 835 79.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1137.1 842 74.1
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1103.6 842 71.7
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1099.3 834 71.0
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 0.0e+00 1099.3 849 71.4
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1099.0 837 71.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 0.0e+00 1097.4 837 71.6
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 0.0e+00 1097.0 842 72.1
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1095.1 832 71.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1085.5 838 70.9
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 0.0e+00 1082.4 831 71.7
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1080.9 838 69.5
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 0.0e+00 1080.9 831 70.0
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 0.0e+00 1077.4 832 69.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1075.8 838 69.1
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1075.8 838 71.4
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.7e-311 1072.4 847 69.5
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.1e-310 1069.7 833 69.5
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.2e-309 1065.4 832 69.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.2e-309 1065.4 832 69.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.8e-309 1065.1 842 68.9
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 5.3e-308 1060.8 840 71.1
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 5.3e-308 1060.8 839 69.0
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.2e-307 1059.7 851 68.7
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.6e-307 1058.5 832 68.5
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.9e-307 1057.4 831 70.3
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.3e-306 1056.2 830 68.7
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.7e-306 1055.8 829 69.6
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.9e-305 1052.4 835 68.1
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.5e-305 1052.0 828 68.5
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 3.2e-305 1051.6 838 68.4
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.2e-304 1049.7 839 67.5
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.6e-304 1047.7 835 67.3
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.0e-303 1045.0 830 67.6
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-302 1042.0 840 68.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.8e-301 1038.5 830 67.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.8e-300 1035.8 833 68.7
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.8e-300 1035.8 834 67.7
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.4e-297 1026.2 857 67.3
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.7e-296 1021.9 832 68.9
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.7e-296 1021.1 835 67.8
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.8e-295 1019.2 851 67.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.0e-294 1015.8 823 68.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 4.4e-294 1014.6 835 66.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.0e-292 1007.3 828 67.6
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.0e-291 1005.7 851 66.6
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.0e-290 1003.4 844 64.6
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 7.2e-289 997.3 843 64.9
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 3.3e-286 988.4 834 66.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.1e-284 983.4 838 66.1
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.3e-282 976.5 831 63.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 7.2e-281 970.7 828 65.0
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.6e-280 969.5 839 65.9
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-279 966.5 828 64.6
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.6e-278 962.2 831 65.6
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 4.1e-276 954.9 844 63.5
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 9.1e-276 953.7 843 65.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 9.1e-276 953.7 838 63.6
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-275 953.4 851 63.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.9e-274 948.7 826 65.6
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 3.2e-273 945.3 834 64.1
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 8.8e-271 937.2 932 58.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.7e-269 932.9 840 62.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 3.1e-268 928.7 867 61.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 8.6e-266 920.6 836 61.1
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.1e-265 920.2 829 60.0
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.1e-260 903.7 836 59.0
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 7.8e-259 897.5 836 60.2
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.1e-257 893.6 812 59.6
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.7e-256 888.3 833 60.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.8e-255 886.3 841 57.2
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-255 886.3 836 59.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.8e-255 886.3 836 59.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 8.9e-255 884.0 815 60.7
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.2e-254 883.6 791 63.3
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 7.5e-254 880.9 814 61.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 7.5e-254 880.9 814 61.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.6e-251 873.2 845 57.9
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 2.7e-251 872.5 881 57.0
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.3e-250 869.4 834 60.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 8.6e-250 867.5 844 58.5
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 4.3e-249 865.1 832 62.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.8e-248 862.4 841 57.3
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.0e-246 856.3 833 59.9
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 7.1e-244 847.8 849 56.8
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.9e-242 842.0 860 55.9
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 6.6e-242 841.3 845 57.4
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 3.6e-240 835.5 854 55.6
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.8e-237 825.5 854 56.9
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.6e-235 820.1 836 55.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 3.1e-231 805.8 851 55.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 8.7e-226 787.7 681 62.3
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.5e-222 775.4 682 62.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.3e-217 759.2 825 52.7
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.5e-209 733.0 844 51.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 8.2e-208 728.0 850 50.7
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 2.9e-205 719.5 628 61.6
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-203 713.0 563 67.5
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.0e-189 665.6 607 63.6
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 8.8e-178 628.2 598 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 7.5e-161 572.0 883 42.1
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 2.2e-152 543.9 457 64.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.9e-150 535.8 845 43.3
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.2e-142 511.5 887 39.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.3e-140 503.1 487 60.6
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 8.9e-138 495.4 380 71.1
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.7e-136 491.1 828 40.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.9e-135 487.6 386 67.6
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.1e-122 443.7 449 59.7
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.4e-119 434.9 432 58.1
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.0e-114 416.8 311 71.1
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 8.7e-109 399.1 937 31.3
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 9.9e-105 385.6 281 78.6
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 7.1e-103 379.4 239 83.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-98 364.8 236 81.4
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 4.9e-96 356.7 449 48.1
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 4.2e-95 353.6 324 63.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-94 352.1 294 64.3
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 5.1e-93 346.7 227 78.0
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.1e-82 310.8 341 51.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-76 292.4 200 74.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.7e-72 278.5 264 63.6
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.6e-62 245.4 195 66.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 8.8e-61 239.6 931 27.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.9e-56 224.6 214 57.0
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.6e-54 218.8 153 68.6
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-52 211.8 181 63.5
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.6e-46 191.0 207 56.5
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.8e-42 178.7 158 60.8
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.7e-41 174.9 180 63.9
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.9e-39 168.7 154 62.3
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 6.8e-37 160.2 170 55.3
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.4e-34 151.8 270 40.7
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 2.0e-33 148.7 579 27.8
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.9e-32 144.8 273 39.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.9e-32 144.4 106 67.9
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.5e-31 142.5 280 38.2
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-31 142.5 184 47.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 4.4e-28 131.0 106 65.1
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 6.4e-27 127.1 599 24.5
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.4e-26 125.9 523 25.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.9e-26 125.6 73 72.6
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.5e-23 115.2 332 30.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 6.2e-22 110.5 96 60.4
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-19 102.8 76 69.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.7e-19 102.4 113 52.2
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.4e-18 99.4 175 45.1
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.6e-17 95.9 197 45.2
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 3.5e-17 94.7 200 44.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.9e-15 89.0 106 49.1
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.4e-13 82.8 123 49.6
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-13 82.8 69 60.9
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.4e-11 73.9 54 72.2
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.1e-09 68.9 65 50.8
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 6.6e-08 63.9 58 56.9
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 4.3e-07 61.2 77 48.1
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.3e-07 61.2 77 48.1
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 7.3e-07 60.5 93 48.4
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.6e-06 59.3 73 47.9
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.7e-06 57.8 64 51.6


User provided reference genes

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