Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 4.6e-155 551.2 282 100.0
QL04p079836 Quercus lobata HOM05D000264 ORTHO05D000152 7.1e-47 191.8 140 70.7
QL04p080058 Quercus lobata HOM05D000264 ORTHO05D000152 1.6e-46 190.7 140 70.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.4e-23 113.6 332 30.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.4e-23 113.6 332 30.4
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 6.9e-18 95.5 72 65.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 6.9e-18 95.5 72 65.3
QL10p054384 Quercus lobata HOM05D000264 ORTHO05D000152 7.6e-17 92.0 137 45.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.0e-16 91.7 55 76.4
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.9e-16 89.4 55 76.4
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.9e-16 89.4 55 74.5
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 4.9e-16 89.4 55 74.5
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 8.4e-16 88.6 64 65.6
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 8.4e-16 88.6 54 74.1
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 8.4e-16 88.6 94 53.2
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 8.4e-16 88.6 58 67.2
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.4e-15 87.8 58 69.0
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.4e-15 87.8 58 69.0
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.9e-15 87.4 55 70.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.9e-15 87.4 55 74.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.5e-15 87.0 54 72.2
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.5e-15 87.0 54 74.1
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 4.2e-15 86.3 55 72.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.2e-15 86.3 58 67.2
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.2e-15 86.3 58 67.2
QL10p052455 Quercus lobata HOM05D000264 ORTHO05D000152 4.2e-15 86.3 159 40.3
QL10p054050 Quercus lobata HOM05D000264 ORTHO05D000152 4.2e-15 86.3 155 38.7
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 4.2e-15 86.3 58 69.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 7.1e-15 85.5 54 70.4
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.3e-15 85.1 58 67.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 9.3e-15 85.1 54 72.2
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 9.3e-15 85.1 54 72.2
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 9.3e-15 85.1 54 72.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.1e-14 84.0 54 70.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.1e-14 84.0 55 70.9
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.7e-14 83.6 84 53.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.5e-14 83.2 94 50.0
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.5e-14 83.2 72 59.7
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.6e-14 82.8 55 69.1
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.6e-14 82.8 55 69.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.6e-14 82.8 55 69.1
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 4.6e-14 82.8 55 70.9
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 6.0e-14 82.4 55 70.9
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.9e-14 82.0 84 51.2
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.3e-13 81.3 62 59.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.3e-13 81.3 94 50.0
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.8e-13 80.9 55 78.2
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.8e-13 80.9 54 66.7
QL10p054095 Quercus lobata HOM05D000264 ORTHO05D000152 1.8e-13 80.9 77 54.5
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.3e-13 80.5 55 67.3
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.9e-13 79.7 55 76.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.1e-13 79.3 55 67.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 5.1e-13 79.3 55 69.1
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 5.1e-13 79.3 54 64.8
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 6.7e-13 79.0 55 67.3
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 6.7e-13 79.0 54 72.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 6.7e-13 79.0 54 72.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 8.7e-13 78.6 55 69.1
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.5e-12 77.8 69 58.0
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-12 77.8 72 55.6
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.9e-12 77.4 54 75.9
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.5e-12 77.0 54 64.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.5e-12 77.0 54 64.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.5e-12 77.0 55 61.8
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.5e-12 77.0 55 61.8
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.5e-12 77.0 54 61.1
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.3e-12 76.6 54 70.4
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 3.3e-12 76.6 54 61.1
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 4.3e-12 76.3 55 69.1
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 4.3e-12 76.3 57 66.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.3e-12 76.3 94 47.9
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 5.7e-12 75.9 55 63.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 9.6e-12 75.1 82 45.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 9.6e-12 75.1 93 47.3
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 9.6e-12 75.1 56 57.1
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.3e-11 74.7 54 70.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.3e-11 74.7 96 41.7
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-11 74.7 54 70.4
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-11 74.7 54 70.4
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.3e-11 74.7 55 56.4
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.3e-11 74.7 55 56.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.3e-11 74.7 55 70.9
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.6e-11 74.3 55 60.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.6e-11 74.3 55 61.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.1e-11 73.9 50 66.0
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.1e-11 73.9 55 60.0
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.8e-11 73.6 52 69.2
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.8e-11 73.6 54 64.8
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 2.8e-11 73.6 55 58.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 3.7e-11 73.2 55 56.4
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 4.8e-11 72.8 54 68.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 4.8e-11 72.8 55 61.8
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 6.3e-11 72.4 58 58.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 8.2e-11 72.0 55 69.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.1e-10 71.6 54 64.8
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.1e-10 71.6 55 56.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.4e-10 71.2 55 58.2
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.4e-10 71.2 47 63.8
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.8e-10 70.9 103 41.7
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.1e-10 70.1 68 51.5
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.1e-10 70.1 94 41.5
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 4.1e-10 69.7 55 54.5
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-10 69.7 54 64.8
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-10 69.7 54 64.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 5.3e-10 69.3 55 54.5
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 5.3e-10 69.3 55 56.4
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 6.9e-10 68.9 55 54.5
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 6.9e-10 68.9 55 56.4
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 6.9e-10 68.9 55 56.4
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 6.9e-10 68.9 55 56.4
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 6.9e-10 68.9 54 59.3
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 9.0e-10 68.6 65 46.2
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.2e-09 68.2 55 56.4
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.6e-09 67.0 55 54.5
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.6e-09 67.0 55 54.5
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.4e-09 66.6 57 49.1
CiPaw.01G084500 Carya illinoinensis HOM05D000264 ORTHO05D000152 4.5e-09 66.2 137 36.5
CiPaw.12G052000 Carya illinoinensis HOM05D000264 ORTHO05D000152 4.5e-09 66.2 152 34.9
CiPaw.12G052300 Carya illinoinensis HOM05D000264 ORTHO05D000152 4.5e-09 66.2 154 35.7
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.9e-09 65.9 54 64.8
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.9e-09 65.9 54 64.8
GSVIVG01020905001 Vitis vinifera HOM05D000264 ORTHO05D000152 7.6e-09 65.5 137 31.4
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-08 64.7 54 63.0
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.7e-08 64.3 55 54.5
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.8e-08 63.2 54 61.1
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 5.0e-08 62.8 69 44.9
Thecc.10G061700 Theobroma cacao HOM05D000264 ORTHO05D000152 1.1e-07 61.6 132 31.8
Cfa006697 Carpinus fangiana HOM05D000264 ORTHO05D000152 3.2e-07 60.1 139 36.7
CiPaw.01G083700 Carya illinoinensis HOM05D000264 ORTHO05D000152 3.2e-07 60.1 152 36.8
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 3.2e-07 60.1 58 50.0
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 7.2e-07 58.9 62 50.0
CiPaw.01G086900 Carya illinoinensis HOM05D000264 ORTHO05D000152 1.6e-06 57.8 142 34.5
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.1e-06 57.4 57 54.4
CiPaw.01G086200 Carya illinoinensis HOM05D000264 ORTHO05D000152 2.7e-06 57.0 134 35.1
CiPaw.01G190700 Carya illinoinensis HOM05D000264 ORTHO05D000152 2.7e-06 57.0 72 45.8
CiPaw.01G086700 Carya illinoinensis HOM05D000264 ORTHO05D000152 6.1e-06 55.8 140 33.6
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 7.9e-06 55.5 57 43.9


User provided reference genes

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