Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1557.7 838 100.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1550.8 839 99.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1215.7 842 79.3
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 0.0e+00 1214.1 835 79.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1139.8 842 74.6
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 0.0e+00 1104.4 841 72.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1102.8 842 72.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1098.6 837 71.2
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1098.2 835 71.3
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 0.0e+00 1097.8 849 71.6
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1094.3 832 71.4
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 0.0e+00 1093.2 837 71.6
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1090.5 837 71.0
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1087.0 837 69.7
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 0.0e+00 1080.5 831 72.0
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 0.0e+00 1079.7 832 70.3
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1078.5 838 69.3
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1078.5 837 71.4
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 0.0e+00 1075.5 832 69.4
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 5.7e-312 1073.5 848 69.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.1e-310 1069.7 833 69.5
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.9e-310 1068.9 841 68.8
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-308 1063.1 832 69.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-308 1063.1 832 69.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 6.9e-308 1060.4 840 71.2
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 6.9e-308 1060.4 851 69.1
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.5e-307 1059.3 830 70.5
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.5e-307 1059.3 840 69.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 7.7e-307 1057.0 833 68.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 6.5e-306 1053.9 829 69.6
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.1e-305 1053.1 828 68.5
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.1e-305 1053.1 830 68.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.4e-305 1052.7 837 68.5
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.5e-305 1052.0 835 68.4
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.6e-304 1049.3 839 67.7
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 7.9e-304 1047.0 835 67.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.0e-303 1045.0 830 67.6
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.3e-302 1041.6 829 68.9
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.3e-302 1041.2 840 68.9
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.2e-301 1038.9 830 68.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 6.3e-301 1037.3 833 67.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.2e-297 1025.0 857 67.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 3.6e-296 1021.5 833 68.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.7e-296 1021.1 836 68.1
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-295 1020.0 851 67.9
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.6e-294 1015.4 824 68.3
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.8e-293 1011.9 835 66.7
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.4e-292 1008.8 827 67.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-291 1006.5 851 67.0
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.7e-290 1002.7 843 65.4
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 6.5e-290 1000.7 844 64.5
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 4.4e-286 988.0 833 66.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.7e-285 984.9 837 66.3
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.7e-282 976.1 830 63.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.1e-281 973.4 827 65.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.1e-280 969.1 839 65.9
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.1e-280 967.6 827 64.7
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.0e-278 962.6 830 65.5
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-276 954.9 837 63.7
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.3e-276 954.5 843 65.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 9.1e-276 953.7 843 63.6
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-275 953.4 851 63.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.9e-274 948.7 826 65.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 6.5e-274 947.6 833 64.3
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 6.8e-271 937.6 932 58.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 4.8e-269 931.4 839 62.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 8.3e-269 930.6 866 61.7
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.0e-266 921.4 835 61.2
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.1e-265 920.2 828 60.1
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.7e-259 899.0 836 58.9
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 8.6e-258 894.0 836 59.9
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 2.1e-256 889.4 812 59.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.6e-256 888.6 832 60.7
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-255 886.3 836 59.7
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.8e-255 886.3 836 59.7
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 8.9e-255 884.0 815 60.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.5e-254 883.2 841 57.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 9.8e-254 880.6 814 60.9
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 9.8e-254 880.6 814 60.9
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 9.8e-254 880.6 791 63.2
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 4.1e-252 875.2 834 61.2
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 5.4e-252 874.8 881 57.3
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.3e-250 870.2 846 57.7
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 3.9e-250 868.6 840 57.5
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-249 866.3 844 58.3
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.9e-249 866.3 831 62.3
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.0e-246 856.3 832 60.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.2e-244 849.0 849 56.7
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 4.6e-243 845.1 844 57.9
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 8.6e-242 840.9 860 55.8
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.4e-239 833.6 854 55.5
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 7.6e-238 827.8 853 57.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 9.2e-236 820.8 835 55.8
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.6e-232 810.1 850 54.9
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-225 786.6 681 62.0
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 8.4e-221 771.2 682 61.9
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.9e-218 762.3 824 52.7
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.5e-209 733.8 843 51.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 6.2e-208 728.4 850 50.7
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 3.2e-204 716.1 628 61.6
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.8e-202 710.3 563 67.5
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.5e-189 664.8 607 63.8
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 3.9e-178 629.4 597 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 5.2e-162 575.9 893 41.7
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.7e-152 544.3 456 64.5
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.9e-150 535.8 844 43.2
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 2.4e-143 513.8 887 39.6
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.6e-141 505.8 491 60.5
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 8.9e-138 495.4 827 41.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 9.8e-137 491.9 380 71.1
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.9e-136 490.3 386 68.1
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.4e-122 444.9 449 59.9
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.8e-121 439.5 428 58.2
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.4e-114 417.5 312 70.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.7e-109 401.4 937 31.4
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.0e-105 387.9 281 79.4
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 7.1e-103 379.4 239 83.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-98 364.8 236 81.4
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.9e-96 357.5 449 48.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.9e-95 354.8 324 63.3
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-94 352.1 293 64.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 4.3e-92 343.6 227 78.0
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.8e-82 311.6 340 52.1
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.5e-76 292.0 200 74.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.4e-73 280.8 264 64.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.6e-62 245.4 195 66.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 5.2e-61 240.4 930 28.1
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.9e-56 224.6 214 57.0
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.6e-54 218.8 153 68.6
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-52 211.8 181 63.5
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.6e-46 191.0 207 56.5
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.1e-42 177.9 157 60.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-41 176.0 180 64.4
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.9e-39 168.7 154 62.3
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 6.8e-37 160.2 170 55.3
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 5.4e-34 150.6 270 40.4
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.2e-33 149.4 578 27.9
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.8e-32 144.4 106 67.9
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 5.0e-32 144.1 273 38.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 2.5e-31 141.7 280 37.9
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.5e-31 141.7 183 47.5
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.7e-27 127.9 523 25.2
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.9e-27 127.5 598 24.6
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 6.4e-27 127.1 106 65.1
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.8e-26 125.6 73 72.6
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.5e-23 115.2 332 30.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 6.2e-22 110.5 96 60.4
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.8e-20 103.2 76 69.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.7e-19 102.4 113 52.2
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 8.3e-19 100.1 175 45.7
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-17 96.3 197 45.2
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 3.5e-17 94.7 200 44.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.5e-15 89.4 108 48.1
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.8e-14 85.1 122 50.8
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-13 82.8 69 60.9
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.4e-11 73.9 54 72.2
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.1e-09 68.9 65 50.8
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.1e-07 63.2 49 63.3
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 5.6e-07 60.8 68 51.5
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 5.6e-07 60.8 68 51.5
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 7.3e-07 60.5 93 48.4
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.7e-06 57.8 63 52.4


User provided reference genes

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