Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 5.3e-259 897.1 437 100.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.8e-222 775.8 440 85.7
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 5.2e-222 774.2 444 84.5
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.4e-211 739.6 427 83.1
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.8e-211 739.2 430 81.9
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.7e-209 732.6 426 83.6
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.9e-208 729.2 428 81.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.5e-208 728.8 426 82.2
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.3e-208 728.4 426 82.2
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.2e-208 728.0 431 81.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 4.2e-208 728.0 426 81.2
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.5e-208 726.9 428 80.1
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.2e-207 726.5 430 80.7
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.2e-207 726.5 434 79.3
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.8e-207 725.3 421 81.7
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 4.7e-207 724.5 425 80.9
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 8.0e-207 723.8 428 79.9
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.0e-206 723.4 427 80.1
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-206 722.6 428 79.7
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.0e-206 721.8 428 79.9
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.0e-206 721.8 426 81.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 3.0e-206 721.8 430 80.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.0e-206 721.5 430 80.0
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 5.2e-206 721.1 426 81.7
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.8e-206 720.7 426 81.5
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 8.9e-206 720.3 430 80.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.5e-205 719.5 433 79.7
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.0e-205 719.2 430 80.0
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 3.4e-205 718.4 428 80.4
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 9.8e-205 716.8 430 80.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 9.2e-203 710.3 425 80.2
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.6e-202 709.5 426 80.5
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-202 709.5 426 80.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.6e-202 709.5 427 78.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 2.0e-202 709.1 430 81.6
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 2.0e-202 709.1 431 79.4
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.7e-202 708.8 425 80.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 3.5e-202 708.4 426 79.6
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 4.5e-202 708.0 426 79.3
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.0e-201 706.8 434 78.1
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 3.3e-200 701.8 426 78.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.3e-200 701.4 426 77.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.1e-199 699.1 428 79.0
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.8e-199 698.7 429 77.9
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 8.0e-199 697.2 426 78.9
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.3e-198 695.7 430 75.3
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.6e-197 692.2 430 78.8
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.6e-197 692.2 424 77.8
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 3.4e-197 691.8 426 77.2
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.4e-197 691.8 407 81.1
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.1e-195 686.8 426 78.6
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 3.2e-195 685.3 426 76.5
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 7.0e-195 684.1 428 76.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 7.0e-195 684.1 430 76.5
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.9e-193 678.3 428 74.8
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.9e-193 678.3 426 77.0
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.5e-192 676.4 428 77.6
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.5e-192 675.6 426 76.5
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.3e-192 675.2 429 76.9
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 4.3e-192 674.9 430 77.0
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 4.3e-192 674.9 426 77.0
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 2.1e-191 672.5 429 77.2
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.1e-190 670.2 422 77.0
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.4e-190 669.8 428 76.2
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.4e-190 669.8 422 76.8
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 5.2e-190 667.9 432 75.7
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 3.4e-189 665.2 423 76.8
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.4e-189 664.8 439 74.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.9e-188 661.4 402 78.4
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.9e-188 661.4 397 79.1
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 4.1e-187 658.3 424 75.0
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.6e-186 656.4 499 65.9
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 4.7e-183 644.8 387 80.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 8.1e-183 644.0 435 73.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-182 642.9 426 74.4
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.3e-182 642.5 425 75.1
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 5.2e-182 641.3 426 74.9
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 5.2e-182 641.3 428 72.7
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 5.2e-182 641.3 426 74.2
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.9e-180 635.6 426 74.2
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 4.9e-180 634.8 426 73.9
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 4.9e-180 634.8 425 74.8
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 6.4e-180 634.4 426 73.7
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 8.3e-180 634.0 426 73.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 2.4e-179 632.5 426 73.2
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 7.1e-179 630.9 426 74.2
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 7.1e-179 630.9 425 73.6
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 6.0e-178 627.9 426 73.9
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.0e-177 627.1 453 69.3
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.7e-177 626.3 426 74.2
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 5.1e-177 624.8 426 73.5
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 5.1e-177 624.8 426 73.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 5.1e-177 624.8 426 73.5
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.1e-174 615.5 438 70.3
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.5e-173 613.2 426 70.9
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.8e-173 611.3 366 78.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.2e-170 603.6 425 69.2
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.5e-170 602.1 468 64.7
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 7.8e-170 600.9 426 69.2
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 8.7e-169 597.4 438 68.9
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-168 597.0 426 71.6
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 5.6e-168 594.7 369 77.5
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.6e-167 593.2 407 71.3
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 4.0e-166 588.6 427 68.6
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.4e-165 585.5 480 64.4
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 5.4e-163 578.2 397 72.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 4.0e-158 562.0 446 66.1
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.6e-157 557.8 319 82.1
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.4e-155 553.5 320 81.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.2e-154 550.4 439 63.8
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.8e-153 546.6 427 66.3
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.6e-146 521.9 319 78.7
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 7.9e-146 521.2 466 57.7
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.3e-145 520.4 426 64.1
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 4.9e-140 501.9 427 61.1
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 5.5e-139 498.4 449 58.8
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 9.7e-128 461.1 425 54.8
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.8e-127 459.5 430 57.2
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.7e-122 443.0 505 47.5
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.8e-121 440.3 269 76.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.1e-114 416.8 306 67.6
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.0e-108 397.9 424 52.4
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-103 380.6 283 70.7
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.1e-90 337.0 196 84.2
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.0e-88 330.5 433 44.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-82 311.2 239 70.3
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.8e-81 307.4 271 59.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 8.9e-81 305.1 339 48.1
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.6e-74 283.1 205 71.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-72 278.1 425 38.1
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.8e-72 275.8 272 53.7
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.0e-69 265.8 156 80.1
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.3e-63 248.1 458 37.1
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.9e-63 246.9 432 37.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.9e-63 246.9 455 37.1
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.6e-59 231.9 181 64.1
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 4.4e-56 223.0 209 54.5
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.9e-54 217.6 198 55.1
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-52 211.1 138 75.4
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.6e-48 197.2 111 80.2
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.9e-47 193.7 111 78.4
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.9e-47 193.0 314 39.8
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.4e-47 192.6 111 79.3
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 6.2e-42 176.0 124 66.9
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.4e-41 174.9 109 75.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.4e-38 164.1 111 69.4
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 2.5e-35 154.1 122 60.7
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.8e-34 150.6 92 73.9
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.2e-31 141.0 152 53.3
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.5e-30 137.5 104 62.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.8e-28 131.3 67 92.5
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.6e-24 117.5 68 77.9
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.4e-24 117.1 230 33.9
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.4e-24 117.1 123 56.1
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 8.4e-23 112.5 61 88.5
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 7.4e-19 99.4 58 79.3
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 1.7e-15 88.2 62 69.4
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.4e-09 67.8 42 78.6
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 4.5e-08 63.5 57 57.9
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 5.9e-08 63.2 88 43.2
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.8e-07 60.5 40 70.0
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 8.5e-07 59.3 40 67.5
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 9.4e-06 55.8 32 75.0


User provided reference genes

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