Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 5.9e-112 407.5 204 100.0
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 4.3e-94 348.2 204 84.3
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 5.6e-94 347.8 204 82.8
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 6.2e-93 344.4 204 83.3
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 1.8e-92 342.8 203 82.3
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 5.2e-92 341.3 204 80.4
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.3e-90 336.7 203 81.3
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.7e-90 336.3 204 81.9
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.9e-90 335.5 197 81.2
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 3.7e-90 335.1 211 80.1
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 4.9e-90 334.7 194 85.6
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 6.4e-90 334.3 203 79.3
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 1.1e-89 333.6 201 80.1
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.1e-89 333.6 204 78.4
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 1.1e-89 333.6 202 78.7
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.1e-89 333.6 205 80.0
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 2.1e-88 329.3 203 79.8
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 3.5e-88 328.6 208 78.4
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 3.5e-88 328.6 206 79.6
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 1.3e-87 326.6 201 76.6
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 3.0e-87 325.5 204 77.5
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 3.9e-87 325.1 199 79.4
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 8.6e-87 323.9 204 77.5
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 1.1e-86 323.6 201 75.6
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 1.9e-86 322.8 202 76.7
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 1.9e-86 322.8 201 75.6
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 2.5e-86 322.4 201 76.1
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.3e-86 322.0 204 77.5
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 7.3e-86 320.9 203 76.4
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 7.3e-86 320.9 201 75.6
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 1.2e-85 320.1 200 79.5
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.2e-85 320.1 201 78.6
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.2e-85 320.1 193 80.8
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 3.6e-85 318.5 201 75.1
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 3.6e-85 318.5 203 76.8
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 3.6e-85 318.5 203 76.8
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 3.6e-85 318.5 201 75.1
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 6.2e-85 317.8 204 75.5
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.4e-84 316.6 201 75.1
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 1.4e-84 316.6 203 76.4
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 2.3e-84 315.8 204 76.5
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 2.3e-84 315.8 204 75.0
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 6.8e-84 314.3 201 75.1
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.5e-83 313.2 221 71.0
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 3.4e-83 312.0 203 73.4
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.7e-82 309.7 201 72.6
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 2.9e-82 308.9 201 76.1
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 2.4e-81 305.8 201 72.6
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 3.2e-81 305.4 204 73.5
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 7.1e-81 304.3 203 72.9
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 3.5e-80 302.0 204 70.1
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 4.6e-80 301.6 192 78.1
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 1.7e-79 299.7 204 69.6
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 1.7e-79 299.7 203 70.9
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 3.9e-79 298.5 202 72.8
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 8.6e-79 297.4 224 65.6
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.1e-78 297.0 175 82.9
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.5e-78 296.6 201 70.1
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 1.5e-78 296.6 201 70.6
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 9.6e-78 293.9 232 63.4
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 1.2e-77 293.5 202 70.3
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 3.6e-77 292.0 180 81.7
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 4.7e-77 291.6 203 69.0
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 5.2e-76 288.1 219 66.7
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 8.9e-76 287.3 201 68.2
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 2.6e-75 285.8 200 69.5
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 2.6e-75 285.8 203 66.5
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 1.3e-74 283.5 202 68.8
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 2.7e-72 275.8 208 65.4
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 3.5e-72 275.4 198 67.2
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 4.6e-72 275.0 201 65.7
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.3e-71 273.5 190 69.5
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 1.7e-71 273.1 203 65.0
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 2.3e-71 272.7 188 69.7
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 1.4e-68 263.5 204 66.2
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 5.8e-67 258.1 166 74.1
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 7.6e-67 257.7 195 67.2
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 2.2e-66 256.1 192 67.2
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 8.4e-66 254.2 202 61.4
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 4.2e-65 251.9 157 77.7
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 5.4e-65 251.5 128 97.7
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 5.4e-65 251.5 128 97.7
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 9.3e-65 250.8 203 63.5
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 1.2e-59 233.8 158 70.3
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 3.4e-59 232.3 155 75.5
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 6.4e-58 228.0 195 58.5
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 9.6e-54 214.2 131 80.9
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.4e-52 210.3 138 75.4
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 1.1e-49 200.7 204 53.9
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 6.0e-48 194.9 147 69.4
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 5.3e-44 181.8 201 47.3
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 2.0e-43 179.9 127 73.2
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 7.6e-43 177.9 164 59.8
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.1e-41 174.1 169 56.2
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 3.6e-40 169.1 189 42.9
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 7.4e-38 161.4 195 45.1
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 2.8e-37 159.5 193 42.0
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 1.1e-33 147.5 130 56.9
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.7e-32 142.9 180 46.1
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.0e-31 141.0 115 63.5
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 1.5e-30 137.1 128 52.3
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 5.0e-26 122.1 92 67.4
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 1.4e-25 120.6 75 76.0
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.5e-25 119.8 194 39.7
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 7.9e-24 114.8 73 76.7
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 6.7e-23 111.7 79 72.2
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 1.7e-21 107.1 157 41.4
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 4.5e-19 99.0 110 56.4
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 7.7e-19 98.2 89 57.3
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 1.9e-17 93.6 195 32.3
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 1.0e-15 87.8 64 65.6
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 1.0e-15 87.8 160 37.5
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 2.7e-11 73.2 44 79.5
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 5.5e-09 65.5 40 62.5
TPR.G22507 Trifolium pratense HOM05D006956 ORTHO05D008824 8.0e-08 61.6 37 70.3
SGA_v2.0_scaffold62G21353 Striga asiatica HOM05D058974 ORTHO05D402092 3.4e-06 56.2 33 81.8
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 5.7e-06 55.5 85 41.2


User provided reference genes

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