Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 4.5e-59 231.1 121 100.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 2.7e-56 221.9 121 96.7
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.4e-54 214.5 121 92.6
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-51 205.7 121 89.3
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 5.5e-49 197.6 121 85.1
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 6.1e-48 194.1 123 87.8
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 6.3e-45 184.1 125 80.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 4.2e-41 171.4 121 75.2
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 6.1e-40 167.5 121 71.9
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 8.0e-40 167.2 121 74.4
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-39 166.4 122 74.6
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-39 166.4 122 74.6
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 4.0e-39 164.9 121 71.1
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 4.0e-39 164.9 123 71.5
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 8.8e-39 163.7 119 75.6
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.2e-38 163.3 121 70.2
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.5e-38 162.9 121 71.9
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.6e-38 162.2 121 71.9
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.6e-38 162.2 121 72.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 4.4e-38 161.4 122 73.0
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 4.4e-38 161.4 121 70.2
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 5.7e-38 161.0 121 71.9
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 7.5e-38 160.6 121 69.4
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 9.8e-38 160.2 121 71.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 2.2e-37 159.1 122 72.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.1e-36 156.8 121 70.2
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.1e-36 154.8 116 69.0
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 5.4e-36 154.5 123 69.9
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 9.2e-36 153.7 121 68.6
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.2e-35 153.3 116 68.1
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.0e-35 152.5 118 70.3
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.0e-35 152.5 124 68.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.7e-35 152.1 121 68.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.8e-35 150.6 135 60.7
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.0e-34 150.2 121 68.6
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.0e-34 150.2 121 68.6
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.8e-34 148.3 126 65.9
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 8.6e-34 147.1 116 66.4
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 8.6e-34 147.1 121 66.9
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.1e-33 146.7 124 66.9
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.5e-33 146.4 121 67.8
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.9e-33 146.0 119 67.2
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.3e-33 145.2 127 66.1
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 3.3e-33 145.2 115 66.1
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 5.6e-33 144.4 121 65.3
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 9.5e-33 143.7 132 59.1
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.6e-32 142.9 127 65.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 8.0e-32 140.6 113 69.0
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.0e-31 140.2 117 64.1
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.8e-31 139.4 120 62.5
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 8.9e-31 137.1 123 60.2
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-30 136.7 116 67.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.5e-30 136.3 119 61.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 4.4e-30 134.8 122 64.8
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 4.4e-30 134.8 118 66.9
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 7.5e-30 134.0 119 59.7
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 9.8e-30 133.7 113 66.4
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.7e-29 132.9 124 63.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.7e-29 131.7 116 63.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 6.4e-29 131.0 121 57.9
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.1e-28 130.2 125 63.2
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.8e-28 129.4 128 60.2
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.8e-28 129.4 128 60.2
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.8e-28 129.4 121 57.9
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 5.4e-28 127.9 119 59.7
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.2e-28 127.1 120 60.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.2e-27 126.7 120 57.5
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.2e-27 126.7 121 58.7
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.6e-27 126.3 119 58.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.0e-27 125.9 122 61.5
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 2.7e-27 125.6 121 57.9
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 4.6e-27 124.8 111 60.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.0e-26 123.6 124 57.3
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.3e-26 123.2 132 54.5
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.3e-26 123.2 121 57.0
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.7e-26 122.9 119 57.1
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.7e-26 122.9 121 57.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.3e-26 122.5 132 54.5
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.3e-26 122.5 121 56.2
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-26 122.5 124 57.3
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 3.0e-26 122.1 99 64.6
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.9e-26 121.7 116 58.6
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.0e-26 121.3 112 61.6
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 5.0e-26 121.3 110 60.9
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 8.6e-26 120.6 113 59.3
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-25 120.2 122 59.0
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.1e-25 120.2 115 62.6
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.9e-25 119.4 123 56.9
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.9e-25 119.4 111 61.3
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.9e-25 119.4 125 56.0
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.5e-25 119.0 121 55.4
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 3.3e-25 118.6 119 60.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 3.3e-25 118.6 110 59.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 9.5e-25 117.1 113 57.5
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 9.5e-25 117.1 125 53.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.2e-24 116.7 110 58.2
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 6.2e-24 114.4 123 56.1
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 5.2e-23 111.3 110 56.4
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 6.8e-23 110.9 116 57.8
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 8.9e-23 110.5 116 55.2
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 8.9e-23 110.5 112 58.0
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 4.4e-22 108.2 112 56.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 9.8e-22 107.1 114 56.1
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 9.8e-22 107.1 122 51.6
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.3e-21 106.7 122 53.3
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.9e-21 104.8 112 57.1
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.9e-21 104.8 112 57.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 6.4e-21 104.4 111 55.0
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 9.2e-20 100.5 109 52.3
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.6e-19 99.8 92 62.0
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.7e-19 99.0 92 58.7
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.7e-19 99.0 115 53.9
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.5e-19 98.6 129 51.2
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.6e-19 98.2 72 72.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.3e-18 96.7 125 50.4
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-18 96.7 111 55.9
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.7e-18 96.3 102 56.9
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.7e-18 96.3 119 50.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.3e-18 95.9 121 51.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 8.6e-18 94.0 94 55.3
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.5e-17 92.4 98 56.1
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.1e-15 87.0 125 45.6
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 6.8e-15 84.3 121 46.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 6.8e-15 84.3 124 46.8
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 8.9e-15 84.0 122 47.5
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.0e-14 82.8 110 49.1
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 3.7e-13 78.6 127 47.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 4.9e-13 78.2 68 66.2
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-12 77.0 46 89.1
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 4.1e-12 75.1 104 46.2
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 7.1e-12 74.3 93 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.7e-10 69.7 111 42.3
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.9e-10 68.6 125 40.8
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 5.1e-10 68.2 112 39.3
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.5e-09 65.9 50 70.0
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 9.5e-09 63.9 96 37.5
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.8e-08 62.4 94 44.7
EL10Ac2g03558 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-07 60.5 68 48.5
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.3e-07 59.3 40 72.5
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.8e-07 57.8 38 73.7
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 8.9e-07 57.4 100 40.0
Eucgr.A02113 Eucalyptus grandis HOM05D003601 ORTHO05D004896 8.9e-07 57.4 54 55.6
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.4e-06 55.1 51 58.8
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 5.8e-06 54.7 84 46.4
CDE08G0618 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 9.9e-06 53.9 55 49.1


User provided reference genes

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