Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.7e-48 195.7 97 100.0
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 4.1e-47 191.0 97 96.9
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 1.9e-44 182.2 97 92.8
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.3e-19 99.8 95 55.8
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.8e-19 98.6 99 62.6
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 2.4e-18 95.5 94 54.3
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 3.1e-18 95.1 94 56.4
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 5.3e-18 94.4 94 56.4
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 6.9e-18 94.0 92 56.5
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 1.5e-17 92.8 98 57.1
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 3.4e-17 91.7 98 54.1
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.9e-16 88.6 95 55.8
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 4.9e-16 87.8 90 56.7
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 4.9e-16 87.8 99 51.5
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.4e-16 87.0 101 50.5
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 8.4e-16 87.0 101 50.5
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.2e-15 85.1 107 45.8
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 5.5e-15 84.3 92 51.1
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.2e-14 83.2 121 45.5
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.6e-14 82.8 121 43.8
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 2.1e-14 82.4 120 46.7
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 2.1e-14 82.4 89 51.7
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 2.1e-14 82.4 95 51.6
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 2.7e-14 82.0 98 50.0
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 2.7e-14 82.0 94 52.1
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.7e-14 82.0 111 46.8
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 2.7e-14 82.0 116 43.1
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 7.9e-14 80.5 91 51.6
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 7.9e-14 80.5 106 43.4
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.3e-13 79.7 93 46.2
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.3e-13 79.7 121 46.3
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.8e-13 79.3 89 48.3
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 3.0e-13 78.6 90 51.1
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.0e-13 78.6 119 47.1
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 6.7e-13 77.4 96 49.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 6.7e-13 77.4 96 47.9
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 8.7e-13 77.0 124 39.5
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 1.5e-12 76.3 92 53.3
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.5e-12 76.3 87 55.2
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.9e-12 75.9 91 48.4
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.9e-12 75.9 96 46.9
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.9e-12 75.9 89 49.4
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 5.7e-12 74.3 109 45.9
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 7.4e-12 73.9 96 45.8
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 9.7e-12 73.6 125 38.4
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.3e-11 73.2 92 50.0
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 2.8e-11 72.0 94 52.1
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 2.8e-11 72.0 100 45.0
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 3.7e-11 71.6 99 45.5
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 4.8e-11 71.2 117 39.3
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 4.8e-11 71.2 92 45.7
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 4.8e-11 71.2 96 44.8
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 6.3e-11 70.9 99 45.5
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 6.3e-11 70.9 106 46.2
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 6.3e-11 70.9 87 49.4
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 8.2e-11 70.5 110 43.6
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.2e-11 70.5 89 47.2
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 8.2e-11 70.5 106 45.3
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 8.2e-11 70.5 103 46.6
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-10 70.1 90 46.7
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-10 70.1 87 49.4
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.1e-10 70.1 98 44.9
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.4e-10 69.7 115 38.3
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.4e-10 69.7 99 43.4
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.4e-10 69.7 99 48.5
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.4e-10 69.7 95 45.3
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 1.4e-10 69.7 87 46.0
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 1.4e-10 69.7 95 48.4
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.4e-10 69.7 102 47.1
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 1.8e-10 69.3 103 42.7
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-10 69.3 90 46.7
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-10 68.9 106 42.5
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-10 68.9 95 44.2
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.4e-10 68.9 95 44.2
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.4e-10 68.9 95 44.2
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.4e-10 68.9 106 44.3
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 2.4e-10 68.9 90 50.0
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 3.1e-10 68.6 96 43.8
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 3.1e-10 68.6 96 43.8
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 4.1e-10 68.2 101 44.6
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 4.1e-10 68.2 96 44.8
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 4.1e-10 68.2 96 44.8
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.1e-10 68.2 88 47.7
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 4.1e-10 68.2 102 43.1
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 4.1e-10 68.2 99 46.5
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.1e-10 68.2 96 43.8
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 4.1e-10 68.2 95 44.2
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 4.1e-10 68.2 89 47.2
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 5.3e-10 67.8 99 43.4
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 5.3e-10 67.8 96 43.8
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 5.3e-10 67.8 99 44.4
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 5.3e-10 67.8 96 43.8
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 5.3e-10 67.8 89 49.4
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 5.3e-10 67.8 89 44.9
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 6.9e-10 67.4 99 43.4
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.9e-10 67.4 106 44.3
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 9.0e-10 67.0 99 42.4
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 9.0e-10 67.0 99 42.4
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 9.0e-10 67.0 104 45.2
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 9.0e-10 67.0 92 44.6
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 1.2e-09 66.6 99 43.4
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.2e-09 66.6 91 48.4
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 1.5e-09 66.2 109 38.5
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.5e-09 66.2 95 42.1
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.5e-09 66.2 97 48.5
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 2.0e-09 65.9 95 45.3
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 2.0e-09 65.9 98 42.9
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 2.0e-09 65.9 95 42.1
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.6e-09 65.5 101 42.6
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 2.6e-09 65.5 95 45.3
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.6e-09 65.5 87 47.1
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.6e-09 65.5 87 47.1
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 2.6e-09 65.5 96 42.7
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 2.6e-09 65.5 80 47.5
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.4e-09 65.1 95 45.3
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 3.4e-09 65.1 99 41.4
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.4e-09 65.1 95 45.3
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.4e-09 65.1 100 39.0
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.4e-09 65.1 41 78.0
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 3.4e-09 65.1 98 43.9
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 4.5e-09 64.7 99 41.4
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.5e-09 64.7 100 44.0
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 4.5e-09 64.7 98 40.8
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 5.9e-09 64.3 93 44.1
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 5.9e-09 64.3 109 45.0
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.9e-09 64.3 97 45.4
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 7.6e-09 63.9 98 40.8
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 7.6e-09 63.9 112 40.2
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 7.6e-09 63.9 109 38.5
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.6e-09 63.9 108 44.4
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 7.6e-09 63.9 108 44.4
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.0e-08 63.5 98 41.8
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.0e-08 63.5 97 43.3
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 1.7e-08 62.8 114 36.0
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 1.7e-08 62.8 98 42.9
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.7e-08 62.8 97 42.3
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.7e-08 62.8 97 42.3
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.2e-08 62.4 95 43.2
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.2e-08 62.4 97 43.3
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.9e-08 62.0 108 40.7
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.9e-08 62.0 102 37.3
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 5.0e-08 61.2 88 44.3
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 5.0e-08 61.2 99 43.4
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 5.0e-08 61.2 96 41.7
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.0e-08 61.2 110 39.1
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 6.5e-08 60.8 97 40.2
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-07 59.7 39 74.4
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 1.9e-07 59.3 35 77.1
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 1.9e-07 59.3 85 41.2
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.9e-07 59.3 91 40.7
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 2.5e-07 58.9 98 38.8
PGR083G2833 Punica granatum HOM05D004022 ORTHO05D336655 2.5e-07 58.9 48 60.4
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.5e-07 58.9 35 82.9
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 4.2e-07 58.2 47 63.8
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 5.5e-07 57.8 48 64.6
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 7.2e-07 57.4 97 38.1
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 7.2e-07 57.4 96 43.8
Migut.M00649 Erythranthe guttata HOM05D004022 ORTHO05D004090 9.3e-07 57.0 81 39.5
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 9.3e-07 57.0 82 45.1
Nn3g20787 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.2e-06 56.6 48 62.5
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 1.2e-06 56.6 97 40.2
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 2.1e-06 55.8 101 40.6
CAN.G262.11 Capsicum annuum HOM05D004022 ORTHO05D004090 2.7e-06 55.5 34 76.5
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 2.7e-06 55.5 36 72.2
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 3.6e-06 55.1 103 35.0
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 3.6e-06 55.1 90 38.9
PGSC0003DMG400007842 Solanum tuberosum HOM05D001023 ORTHO05D000912 3.6e-06 55.1 38 68.4
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.6e-06 54.7 80 43.8
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 7.9e-06 53.9 95 36.8
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 7.9e-06 53.9 37 70.3
Sopen12g006680 Solanum pennellii HOM05D004022 ORTHO05D004090 7.9e-06 53.9 38 65.8


User provided reference genes

Program Settings