Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.2e-47 191.4 97 100.0
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 5.1e-45 184.1 97 95.9
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 9.6e-44 179.9 97 92.8
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 8.2e-19 97.1 99 60.6
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.8e-18 95.9 95 54.7
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 2.6e-17 92.0 99 57.6
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 4.5e-17 91.3 94 55.3
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.3e-16 89.7 94 54.3
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 1.7e-16 89.4 96 56.2
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.5e-15 85.5 92 54.3
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 4.2e-15 84.7 96 52.1
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 4.2e-15 84.7 91 57.1
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 3.5e-14 81.6 98 50.0
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 3.5e-14 81.6 93 50.5
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.3e-13 79.7 89 51.7
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.3e-13 79.7 95 51.6
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-13 79.3 101 47.5
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.8e-13 79.3 101 47.5
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 3.0e-13 78.6 98 50.0
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.9e-13 78.2 107 47.7
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 6.7e-13 77.4 94 52.1
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.7e-13 77.4 121 44.6
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 8.7e-13 77.0 120 45.8
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.1e-12 76.6 121 44.6
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 1.1e-12 76.6 94 51.1
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 1.5e-12 76.3 116 43.1
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.9e-12 75.9 92 48.9
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.5e-12 75.5 91 49.5
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.5e-12 75.5 112 46.4
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 4.3e-12 74.7 89 47.2
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 4.3e-12 74.7 89 50.6
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 7.4e-12 73.9 121 42.1
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 7.4e-12 73.9 108 42.6
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 9.7e-12 73.6 92 46.7
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.3e-11 73.2 96 50.0
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.2e-11 72.4 96 45.8
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.2e-11 72.4 119 42.9
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.2e-11 72.4 91 47.3
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.2e-11 72.4 96 45.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.2e-11 72.4 96 47.9
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 4.8e-11 71.2 92 52.2
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 6.3e-11 70.9 109 45.9
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.8e-10 69.3 124 37.1
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 2.4e-10 68.9 87 52.9
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.1e-10 68.6 100 43.0
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 6.9e-10 67.4 87 48.3
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 6.9e-10 67.4 92 47.8
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 9.0e-10 67.0 125 38.4
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.2e-09 66.6 107 43.0
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 1.2e-09 66.6 117 38.5
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 1.2e-09 66.6 92 44.6
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 1.2e-09 66.6 93 44.1
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.5e-09 66.2 89 46.1
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.5e-09 66.2 90 45.6
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.6e-09 65.5 107 43.0
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 2.6e-09 65.5 100 45.0
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 3.4e-09 65.1 99 43.4
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 3.4e-09 65.1 88 48.9
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.4e-09 65.1 90 45.6
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 4.5e-09 64.7 115 37.4
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 4.5e-09 64.7 90 48.9
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 5.9e-09 64.3 99 43.4
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 5.9e-09 64.3 87 46.0
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.9e-09 64.3 87 49.4
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 5.9e-09 64.3 95 46.3
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 7.6e-09 63.9 103 42.7
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 7.6e-09 63.9 99 45.5
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 7.6e-09 63.9 87 44.8
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 7.6e-09 63.9 87 44.8
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 7.6e-09 63.9 106 44.3
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 7.6e-09 63.9 95 43.2
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.6e-09 63.9 107 42.1
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 7.6e-09 63.9 103 43.7
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 1.0e-08 63.5 105 41.9
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.0e-08 63.5 99 45.5
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.0e-08 63.5 96 42.7
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 1.0e-08 63.5 92 44.6
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-08 63.2 91 44.0
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 1.3e-08 63.2 91 44.0
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 1.3e-08 63.2 91 44.0
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.3e-08 63.2 95 44.2
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.3e-08 63.2 102 43.1
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.3e-08 63.2 95 42.1
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 1.7e-08 62.8 101 44.6
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 1.7e-08 62.8 88 45.5
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.7e-08 62.8 90 45.6
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 1.7e-08 62.8 89 44.9
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 2.2e-08 62.4 91 42.9
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.2e-08 62.4 95 43.2
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 2.2e-08 62.4 91 42.9
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.2e-08 62.4 107 42.1
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.2e-08 62.4 100 38.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.9e-08 62.0 89 46.1
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 2.9e-08 62.0 102 41.2
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.9e-08 62.0 104 44.2
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 2.9e-08 62.0 110 40.9
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 2.9e-08 62.0 109 37.6
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.9e-08 62.0 41 75.6
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.9e-08 62.0 103 42.7
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 3.8e-08 61.6 95 41.1
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 5.0e-08 61.2 100 43.0
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 5.0e-08 61.2 100 44.0
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 5.0e-08 61.2 95 43.2
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 5.0e-08 61.2 89 42.7
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 6.5e-08 60.8 95 41.1
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 6.5e-08 60.8 96 41.7
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 6.5e-08 60.8 96 41.7
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 6.5e-08 60.8 95 46.3
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 8.5e-08 60.5 101 42.6
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 8.5e-08 60.5 101 40.6
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 8.5e-08 60.5 96 40.6
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 8.5e-08 60.5 99 41.4
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 8.5e-08 60.5 96 40.6
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-07 60.1 100 43.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-07 60.1 95 42.1
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-07 60.1 95 43.2
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.1e-07 60.1 100 43.0
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.1e-07 60.1 109 35.8
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 1.4e-07 59.7 99 40.4
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.4e-07 59.7 95 43.2
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 1.4e-07 59.7 96 41.7
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.4e-07 59.7 97 42.3
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-07 59.3 95 43.2
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 1.9e-07 59.3 95 43.2
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.9e-07 59.3 95 41.1
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 1.9e-07 59.3 80 45.0
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 3.2e-07 58.5 93 41.9
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.2e-07 58.5 108 41.7
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.2e-07 58.5 108 41.7
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 3.2e-07 58.5 97 40.2
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 4.2e-07 58.2 94 41.5
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 4.2e-07 58.2 109 42.2
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 4.2e-07 58.2 114 35.1
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 4.2e-07 58.2 95 43.2
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.5e-07 57.8 110 40.0
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 7.2e-07 57.4 97 42.3
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 7.2e-07 57.4 94 44.7
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 9.3e-07 57.0 48 64.6
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 9.3e-07 57.0 99 41.4
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 9.3e-07 57.0 95 38.9
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 9.3e-07 57.0 95 38.9
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 9.3e-07 57.0 99 39.4
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-06 56.6 39 71.8
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 2.1e-06 55.8 35 74.3
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.1e-06 55.8 35 80.0
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 2.7e-06 55.5 85 40.0
PGR083G2833 Punica granatum HOM05D004022 ORTHO05D336655 2.7e-06 55.5 48 58.3
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 3.6e-06 55.1 108 38.9
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 3.6e-06 55.1 47 61.7
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 3.6e-06 55.1 95 38.9
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.6e-06 55.1 91 39.6
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 4.6e-06 54.7 96 37.5
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 6.1e-06 54.3 48 62.5
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 7.9e-06 53.9 88 40.9
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 7.9e-06 53.9 101 39.6


User provided reference genes

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