Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 7.3e-92 340.5 167 100.0
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 1.6e-67 259.6 169 78.7
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 2.2e-40 169.5 172 54.7
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 4.2e-39 165.2 174 54.6
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 2.8e-27 125.9 156 48.7
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 9.1e-26 120.9 172 43.0
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 2.0e-25 119.8 162 48.1
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 2.5e-23 112.8 150 42.7
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 2.1e-22 109.8 179 43.6
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 8.0e-22 107.8 171 43.3
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 1.4e-21 107.1 164 42.7
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 1.4e-21 107.1 155 48.4
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 2.3e-21 106.3 173 45.1
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 3.9e-21 105.5 151 47.7
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 5.2e-21 105.1 160 43.1
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 5.2e-21 105.1 152 44.7
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 1.5e-20 103.6 161 42.9
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 1.5e-20 103.6 161 42.9
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 3.3e-20 102.4 156 41.7
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 5.7e-20 101.7 161 42.2
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 2.2e-19 99.8 161 42.2
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 4.8e-19 98.6 161 42.2
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 4.8e-19 98.6 166 42.2
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 3.1e-18 95.9 166 41.6
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 5.3e-18 95.1 158 38.6
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 9.1e-18 94.4 159 44.7
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.2e-17 94.0 165 42.4
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 1.6e-17 93.6 163 44.8
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.3e-16 90.5 154 40.3
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 8.5e-16 87.8 154 39.0
ECA236G2480 Erigeron canadensis HOM05D002418 ORTHO05D002572 1.9e-15 86.7 156 37.8
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.2e-15 85.5 154 39.6
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.2e-15 85.5 160 40.6
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 4.2e-15 85.5 178 39.9
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 4.2e-15 85.5 173 38.2
TAR626G0317 Trochodendron aralioides HOM05D008142 ORTHO05D009674 5.5e-15 85.1 171 36.3
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.2e-14 84.0 154 38.3
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.6e-14 83.6 154 39.0
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.1e-14 83.2 154 39.0
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.7e-14 82.8 154 38.3
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 4.7e-14 82.0 154 39.0
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.7e-14 82.0 154 37.7
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 1.0e-13 80.9 164 35.4
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.4e-13 80.5 154 39.0
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.3e-13 79.7 154 38.3
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.3e-13 79.7 154 38.3
Potri.001G379300 Populus trichocarpa HOM05D015893 ORTHO05D009674 3.0e-13 79.3 167 37.1
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 6.7e-13 78.2 146 40.4
MBI07_g26359_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 1.2e-12 77.4 142 38.0
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 1.5e-12 77.0 172 32.0
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 5.7e-12 75.1 69 49.3
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 9.7e-12 74.3 160 38.1
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 9.7e-12 74.3 170 37.6
COL.COLO4_17431 Corchorus olitorius HOM05D023069 ORTHO05D009674 4.8e-11 72.0 141 32.6
MBI10_g02220_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 8.2e-11 71.2 140 37.9
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 8.2e-11 71.2 158 36.7
Oeu020029.1 Olea europaea HOM05D008142 ORTHO05D009674 1.1e-10 70.9 157 38.9
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 1.4e-10 70.5 153 36.6
Phvul.005G061600 Phaseolus vulgaris HOM05D012055 ORTHO05D014183 3.1e-10 69.3 162 34.6
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 9.1e-10 67.8 173 34.1
Oeu020030.1 Olea europaea HOM05D008142 ORTHO05D009674 2.7e-09 66.2 156 34.0
Lsat_1_v5_gn_7_100541 Lactuca sativa HOM05D008142 ORTHO05D009674 5.9e-09 65.1 170 32.9
Thecc.07G144300 Theobroma cacao HOM05D023069 ORTHO05D009674 5.9e-09 65.1 132 35.6
Glyma.13G260000 Glycine max HOM05D012055 ORTHO05D014183 7.7e-09 64.7 150 34.0
MD11G1276300 Malus domestica HOM05D015893 ORTHO05D019166 7.7e-09 64.7 164 34.8
Sabra16G0249800 Salix brachista HOM05D008142 ORTHO05D009674 7.7e-09 64.7 151 37.1
PGSC0003DMG400007050 Solanum tuberosum HOM05D011950 ORTHO05D009674 7.7e-09 64.7 167 34.1
MSTRG.6725 Avicennia marina HOM05D008142 ORTHO05D009674 1.0e-08 64.3 162 32.7
MD03G1255600 Malus domestica HOM05D015893 ORTHO05D019166 2.2e-08 63.2 156 35.3
DCAR_013786 Daucus carota HOM05D019704 ORTHO05D009674 3.8e-08 62.4 151 33.1
Nitab4.5_0004038g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 3.8e-08 62.4 188 34.6
RcHm_v2.0_Chr5g0028161 Rosa chinensis HOM05D015893 ORTHO05D019166 5.0e-08 62.0 160 33.1
Glyma.15G248000 Glycine max HOM05D012055 ORTHO05D014183 6.5e-08 61.6 154 35.7
Gorai.002G040400 Gossypium raimondii HOM05D023069 ORTHO05D009674 8.5e-08 61.2 127 36.2
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 1.1e-07 60.8 156 34.6
Sopen07g030160 Solanum pennellii HOM05D011950 ORTHO05D009674 1.1e-07 60.8 168 32.1
Gohir.D01G033300 Gossypium hirsutum HOM05D023069 ORTHO05D009674 1.5e-07 60.5 127 36.2
Aqoxy1G01721 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 1.9e-07 60.1 158 31.6
SGA_v2.0_scaffold73G24333 Striga asiatica HOM05D008142 ORTHO05D009674 1.9e-07 60.1 142 32.4
Ca_03397_v3 Cicer arietinum L. HOM05D012055 ORTHO05D014183 2.5e-07 59.7 149 30.2
DCAR_021049 Daucus carota HOM05D008142 ORTHO05D009674 2.5e-07 59.7 184 35.3
Psat0s1353g0040 Pisum sativum HOM05D012055 ORTHO05D014183 2.5e-07 59.7 143 32.9
FvH4_3g16930 Fragaria vesca HOM05D015893 ORTHO05D019166 3.2e-07 59.3 160 31.2
FAN11G0710 Fragaria x ananassa HOM05D015893 ORTHO05D019166 3.2e-07 59.3 160 31.2
FAN16G3477 Fragaria x ananassa HOM05D015893 ORTHO05D019166 3.2e-07 59.3 160 31.2
THA.LOC104822599 Tarenaya hassleriana HOM05D010899 ORTHO05D012947 4.2e-07 58.9 159 33.3
Nitab4.5_0020402g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 7.2e-07 58.2 171 33.3
TPR.G26651 Trifolium pratense HOM05D012055 ORTHO05D014183 7.2e-07 58.2 152 31.6
Solyc07g061890.1 Solanum lycopersicum HOM05D011950 ORTHO05D009674 9.4e-07 57.8 167 32.9
Sc16g0007870 Simmondsia chinensis HOM05D008142 ORTHO05D009674 1.6e-06 57.0 176 33.5
Medtr2g071750 Medicago truncatula HOM05D012055 ORTHO05D014183 2.1e-06 56.6 145 33.8
Peaxi162Scf00000g00523 Petunia axillaris HOM05D011950 ORTHO05D009674 2.1e-06 56.6 169 32.5
Cc05_g10420 Coffea canephora HOM05D011950 ORTHO05D009674 2.7e-06 56.2 173 32.9
Gohir.A01G042700 Gossypium hirsutum HOM05D023069 ORTHO05D009674 4.7e-06 55.5 127 33.9
Cpa.g.sc714.2 Carica papaya HOM05D008142 ORTHO05D009674 8.0e-06 54.7 108 38.9


User provided reference genes

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