Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p069561 Quercus lobata HOM05D000097 ORTHO05D009232 4.8e-68 261.2 144 100.0
QL04p078289 Quercus lobata HOM05D000097 ORTHO05D009232 1.3e-12 77.0 56 69.6
Cfa000775 Carpinus fangiana HOM05D000097 ORTHO05D009232 3.2e-11 72.4 86 50.0
Cfa011240 Carpinus fangiana HOM05D000097 ORTHO05D009232 4.6e-10 68.6 58 53.4
Cfa012990 Carpinus fangiana HOM05D000097 ORTHO05D009232 2.3e-09 66.2 62 53.2
Cfa011097 Carpinus fangiana HOM05D000097 ORTHO05D009232 5.1e-09 65.1 88 43.2
Prupe.3G237300 Prunus persica HOM05D000097 ORTHO05D000041 8.7e-09 64.3 64 53.1
Prupe.3G237000 Prunus persica HOM05D000097 ORTHO05D009232 1.1e-08 63.9 64 53.1
Haze_02588 Corylus avellana HOM05D000097 ORTHO05D000041 1.9e-08 63.2 51 56.9
MD17G1100900 Malus domestica HOM05D000097 ORTHO05D009232 1.9e-08 63.2 101 41.6
Cfa015092 Carpinus fangiana HOM05D000097 ORTHO05D009232 3.3e-08 62.4 66 48.5
Haze_02792 Corylus avellana HOM05D000097 ORTHO05D009232 3.3e-08 62.4 64 46.9
Cfa017761 Carpinus fangiana HOM05D024057 ORTHO05D009232 4.3e-08 62.0 67 44.8
Haze_02562 Corylus avellana HOM05D000097 ORTHO05D009232 4.3e-08 62.0 113 38.1
FAN08G2061 Fragaria x ananassa HOM05D000097 ORTHO05D009232 4.3e-08 62.0 65 46.2
Prupe.3G237500 Prunus persica HOM05D000097 ORTHO05D000041 5.6e-08 61.6 50 60.0
Haze_01722 Corylus avellana HOM05D000097 ORTHO05D009232 9.6e-08 60.8 46 60.9
MD17G1101100 Malus domestica HOM05D000097 ORTHO05D000041 9.6e-08 60.8 101 39.6
QL04p044640 Quercus lobata HOM05D000097 ORTHO05D009232 9.6e-08 60.8 51 60.8
CiPaw.12G014700 Carya illinoinensis HOM05D000097 ORTHO05D009232 1.3e-07 60.5 51 49.0
Haze_02556 Corylus avellana HOM05D000097 ORTHO05D009232 1.3e-07 60.5 65 46.2
Haze_02559 Corylus avellana HOM05D000097 ORTHO05D009232 1.3e-07 60.5 65 46.2
Haze_02571 Corylus avellana HOM05D000097 ORTHO05D009232 1.6e-07 60.1 66 47.0
FvH4_5g36310 Fragaria vesca HOM05D012044 ORTHO05D009232 1.6e-07 60.1 64 46.9
FAN04G0035 Fragaria x ananassa HOM05D000097 ORTHO05D009232 1.6e-07 60.1 64 43.8
Prupe.4G282500 Prunus persica HOM05D000097 ORTHO05D000041 1.6e-07 60.1 50 56.0
QL04p078301 Quercus lobata HOM05D000097 ORTHO05D009232 1.6e-07 60.1 51 60.8
Thecc.03G016000 Theobroma cacao HOM05D000097 ORTHO05D009232 1.6e-07 60.1 68 41.2
Cfa010359 Carpinus fangiana HOM05D000097 ORTHO05D009232 2.1e-07 59.7 84 44.0
Cfa011094 Carpinus fangiana HOM05D000097 ORTHO05D009232 2.1e-07 59.7 60 46.7
QL04p047175 Quercus lobata HOM05D000097 ORTHO05D009232 2.1e-07 59.7 50 52.0
Haze_01757 Corylus avellana HOM05D000097 ORTHO05D009232 2.8e-07 59.3 56 50.0
FvH4_5g19322 Fragaria vesca HOM05D000097 ORTHO05D009232 3.7e-07 58.9 53 49.1
QL02p065412 Quercus lobata HOM05D000097 ORTHO05D009232 3.7e-07 58.9 50 52.0
Manes.07G088350 Manihot esculenta HOM05D000097 ORTHO05D000041 8.1e-07 57.8 54 53.7
Manes.07G089101 Manihot esculenta HOM05D000097 ORTHO05D009232 8.1e-07 57.8 54 55.6
Cfa019375 Carpinus fangiana HOM05D000596 ORTHO05D001497 1.1e-06 57.4 51 56.9
Cfa019379 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.1e-06 57.4 51 56.9
RcHm_v2.0_Chr2g0162691 Rosa chinensis HOM05D000097 ORTHO05D009232 1.1e-06 57.4 63 47.6
Cfa011242 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.4e-06 57.0 62 41.9
CiPaw.01G096800 Carya illinoinensis HOM05D000097 ORTHO05D009232 1.4e-06 57.0 65 46.2
CiPaw.13G052500 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.4e-06 57.0 58 46.6
Haze_02587 Corylus avellana HOM05D000097 ORTHO05D000041 1.8e-06 56.6 62 43.5
CiPaw.01G104800 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.4e-06 56.2 70 40.0
CiPaw.14G042100 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.4e-06 56.2 58 41.4
CiPaw.01G097000 Carya illinoinensis HOM05D000097 ORTHO05D000041 3.1e-06 55.8 73 41.1
QL08p060780 Quercus lobata HOM05D000097 ORTHO05D009232 3.1e-06 55.8 58 50.0
CiPaw.13G052400 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.0e-06 55.5 53 49.1
CiPaw.13G114700 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.0e-06 55.5 59 39.0
Haze_02566 Corylus avellana HOM05D000097 ORTHO05D000041 4.0e-06 55.5 51 51.0
Prupe.2G080300 Prunus persica HOM05D000097 ORTHO05D000041 4.0e-06 55.5 68 42.6
Cfa012991 Carpinus fangiana HOM05D000097 ORTHO05D009232 5.3e-06 55.1 60 41.7
Haze_07767 Corylus avellana HOM05D000596 ORTHO05D001497 5.3e-06 55.1 51 52.9
Manes.07G088650 Manihot esculenta HOM05D000097 ORTHO05D000041 5.3e-06 55.1 54 51.9
QL04p043907 Quercus lobata HOM05D000097 ORTHO05D009232 5.3e-06 55.1 58 50.0
TWI15G0201 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 6.9e-06 54.7 53 50.9
FvH4_6g44620 Fragaria vesca HOM05D000097 ORTHO05D009232 9.0e-06 54.3 82 39.0
FvH4_6g45154 Fragaria vesca HOM05D000097 ORTHO05D000041 9.0e-06 54.3 50 52.0
FvH4_6g51440 Fragaria vesca HOM05D000097 ORTHO05D000041 9.0e-06 54.3 84 38.1


User provided reference genes

Program Settings