Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 3.8e-79 298.1 152 100.0
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 2.2e-31 139.4 201 45.8
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 8.0e-29 131.0 221 42.1
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 5.2e-28 128.3 227 41.9
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 2.2e-26 122.9 233 39.1
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.8e-26 122.5 217 41.5
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 7.0e-25 117.9 223 39.0
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 2.7e-24 115.9 213 39.4
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 3.8e-23 112.1 245 35.9
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.2e-22 108.6 92 60.9
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 7.2e-22 107.8 230 37.8
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.5e-22 107.5 92 59.8
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 1.6e-21 106.7 163 42.9
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 2.1e-21 106.3 176 42.0
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 2.1e-21 106.3 176 42.0
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.8e-21 105.9 92 58.7
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 8.0e-21 104.4 216 40.3
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 8.0e-21 104.4 216 40.3
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.0e-20 104.0 216 39.8
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.8e-20 103.2 213 36.2
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 2.3e-20 102.8 181 39.2
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 4.0e-20 102.1 244 36.1
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.2e-20 101.7 163 42.3
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 6.8e-20 101.3 133 45.9
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 6.8e-20 101.3 196 37.8
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 8.8e-20 100.9 173 37.6
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.2e-19 100.5 180 39.4
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.5e-19 100.1 172 39.0
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 9.8e-19 97.4 178 36.5
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.3e-18 97.1 201 39.8
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 1.4e-17 93.6 114 48.2
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.4e-17 93.6 59 71.2
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.8e-17 93.2 201 36.3
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 5.4e-17 91.7 124 46.8
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 7.0e-17 91.3 172 36.6
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.5e-16 89.0 59 66.1
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 5.9e-16 88.2 85 50.6
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 8.6e-15 84.3 66 59.1
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.1e-14 84.0 165 35.2
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 9.5e-14 80.9 57 59.6
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 9.5e-14 80.9 126 39.7
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 3.6e-13 79.0 57 57.9
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 4.7e-13 78.6 54 64.8
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 4.0e-12 75.5 125 38.4
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 5.2e-12 75.1 125 38.4
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 6.8e-12 74.7 60 58.3
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.7e-10 70.1 150 31.3
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.2e-10 69.7 162 31.5
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.4e-09 67.0 149 29.5
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.1e-09 65.5 159 29.6
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 5.4e-09 65.1 60 48.3
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.2e-08 63.9 56 48.2
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 1.6e-08 63.5 51 52.9
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 2.7e-08 62.8 162 27.2
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.5e-08 62.4 60 45.0
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.5e-08 62.4 60 45.0
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 3.5e-08 62.4 161 31.1
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 5.9e-08 61.6 61 45.9
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 7.8e-08 61.2 60 41.7
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.0e-07 60.8 60 41.7
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 1.0e-07 60.8 60 43.3
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.0e-07 60.8 56 48.2
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 1.3e-07 60.5 60 43.3
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.3e-07 60.5 150 27.3
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.7e-07 60.1 162 29.0
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 2.3e-07 59.7 160 28.8
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 2.3e-07 59.7 60 41.7
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 2.3e-07 59.7 56 48.2
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.3e-07 59.7 60 43.3
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 2.3e-07 59.7 160 27.5
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 3.0e-07 59.3 54 50.0
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 3.0e-07 59.3 54 51.9
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 3.9e-07 58.9 60 41.7
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 3.9e-07 58.9 60 43.3
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 5.0e-07 58.5 60 43.3
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.6e-07 58.2 60 41.7
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 8.6e-07 57.8 54 48.1
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 8.6e-07 57.8 60 43.3
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 8.6e-07 57.8 56 50.0
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 8.6e-07 57.8 60 45.0
Lsat_1_v5_gn_8_3220 Lactuca sativa HOM05D007028 ORTHO05D003658 1.1e-06 57.4 54 48.1
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 1.1e-06 57.4 54 51.9
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.1e-06 57.4 165 27.3
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 1.1e-06 57.4 129 34.1
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 1.5e-06 57.0 56 46.4
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.5e-06 57.0 54 51.9
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.5e-06 57.0 165 29.1
Dinv19203 Davidia involucrata HOM05D007028 ORTHO05D003658 1.5e-06 57.0 56 51.8
FvH4_2g19050 Fragaria vesca HOM05D007028 ORTHO05D003658 1.5e-06 57.0 56 48.2
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.5e-06 57.0 60 41.7
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 1.9e-06 56.6 56 42.9
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 1.9e-06 56.6 151 26.5
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.9e-06 56.6 65 35.4
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 2.5e-06 56.2 60 48.3
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 2.5e-06 56.2 54 51.9
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 2.5e-06 56.2 167 26.9
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 2.5e-06 56.2 60 40.0
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 2.5e-06 56.2 54 48.1
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 2.5e-06 56.2 54 48.1
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.5e-06 56.2 54 48.1
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 3.3e-06 55.8 60 43.3
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 3.3e-06 55.8 58 48.3
Manes.08G105400 Manihot esculenta HOM05D007028 ORTHO05D003658 3.3e-06 55.8 59 47.5
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 3.3e-06 55.8 60 43.3
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 4.3e-06 55.5 54 48.1
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 4.3e-06 55.5 56 44.6
FAN15G3354 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.3e-06 55.5 56 44.6
FAN27G2710 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.3e-06 55.5 56 44.6
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.3e-06 55.5 171 26.3
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 4.3e-06 55.5 56 50.0
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 4.3e-06 55.5 54 46.3
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 5.6e-06 55.1 54 46.3
Nitab4.5_0003312g0020 Nicotiana tabacum HOM05D007028 ORTHO05D003658 5.6e-06 55.1 52 48.1
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 7.3e-06 54.7 90 34.4
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 7.3e-06 54.7 60 40.0
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 7.3e-06 54.7 53 47.2
FAN24G0765 Fragaria x ananassa HOM05D007028 ORTHO05D003658 9.5e-06 54.3 56 44.6
TPR.G23292 Trifolium pratense HOM05D007028 ORTHO05D003658 9.5e-06 54.3 58 44.8


User provided reference genes

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